Analysis of interatomic Contacts of Structural Units in PDB entry:
2H9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2H9E entry

There are 4 chains in PDB entry 2H9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ILE 16LYS 243
L
 CYS 89THR 136
C
 CYS 6ARG 83
S
 ILE 2LEU 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2H9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
55 61Right-handed 310
Helix 2
2
H
124 131Right-handed alpha
Helix 3
3
H
163 171Right-handed alpha
Helix 4
4
H
234 242Right-handed alpha
Helix 5
5
L
92 96Right-handed 310
Helix 6
6
C
66 71Right-handed alpha
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There are 6 sheets in PDB entry 2H9E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
155 162anti-parallel
Strand 3
H
179 182anti-parallel
Strand 4
H
226 230anti-parallel
Strand 5
H
206 215anti-parallel
Strand 6
H
198 203anti-parallel
Strand 7
H
135 140anti-parallel
Strand 8
H
155 162anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
81 83first strand
Strand 2
H
64 68anti-parallel
Strand 3
H
30 35anti-parallel
Strand 4
H
40 46anti-parallel
Strand 5
H
51 54anti-parallel
Strand 6
H
104 108anti-parallel
Strand 7
H
85 91anti-parallel
Strand 8
C
75 78anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
99 103first strand
Strand 2
L
106 110anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 117first strand
Strand 2
L
124 126anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
51 52anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
64 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il