Analysis of interatomic Contacts of Structural Units in PDB entry:
2HD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2HD0 entry

There are 12 chains in PDB entry 2HD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 217
B	SER 2	LEU 217
C	SER 2	LEU 217
D	SER 2	LEU 217
E	SER 2	LEU 217
F	SER 2	LEU 217
G	SER 2	LEU 217
H	GLY 1	LEU 217
I	SER 2	LEU 217
J	SER 2	LEU 217
K	SER 2	LEU 217
L	SER 2	LEU 217

There are 67 helices in PDB entry 2HD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	95	Right-handed 310
Helix 2	2	A	101	115	Right-handed alpha
Helix 3	3	A	121	136	Right-handed alpha
Helix 4	4	A	146	150	Right-handed 310
Helix 5	5	A	154	159	Right-handed alpha
Helix 6	6	A	209	213	Right-handed 310
Helix 7	7	B	2	95	Right-handed 310
Helix 8	8	B	101	117	Right-handed alpha
Helix 9	9	B	121	136	Right-handed alpha
Helix 10	10	B	146	150	Right-handed 310
Helix 11	11	B	154	159	Right-handed alpha
Helix 12	12	B	209	213	Right-handed 310
Helix 13	13	C	2	95	Right-handed 310
Helix 14	14	C	101	115	Right-handed alpha
Helix 15	15	C	121	137	Right-handed alpha
Helix 16	16	C	146	150	Right-handed 310
Helix 17	17	C	154	159	Right-handed alpha
Helix 18	18	C	209	213	Right-handed 310
Helix 19	19	D	2	95	Right-handed 310
Helix 20	20	D	101	116	Right-handed alpha
Helix 21	21	D	121	136	Right-handed alpha
Helix 22	22	D	146	150	Right-handed 310
Helix 23	23	D	208	213	Right-handed 310
Helix 24	24	E	2	95	Right-handed 310
Helix 25	25	E	101	114	Right-handed alpha
Helix 26	26	E	115	117	Right-handed 310
Helix 27	27	E	121	137	Right-handed alpha
Helix 28	28	E	146	150	Right-handed 310
Helix 29	29	E	154	159	Right-handed alpha
Helix 30	30	E	209	213	Right-handed 310
Helix 31	31	F	2	95	Right-handed 310
Helix 32	32	F	101	115	Right-handed alpha
Helix 33	33	F	121	136	Right-handed alpha
Helix 34	34	F	146	150	Right-handed 310
Helix 35	35	F	154	159	Right-handed alpha
Helix 36	36	F	208	213	Right-handed 310
Helix 37	37	G	2	95	Right-handed 310
Helix 38	38	G	101	115	Right-handed alpha
Helix 39	39	G	121	137	Right-handed alpha
Helix 40	40	G	146	150	Right-handed 310
Helix 41	41	G	154	159	Right-handed alpha
Helix 42	42	H	101	115	Right-handed alpha
Helix 43	43	H	121	137	Right-handed alpha
Helix 44	44	H	146	150	Right-handed 310
Helix 45	45	H	154	159	Right-handed alpha
Helix 46	46	H	209	213	Right-handed 310
Helix 47	47	I	2	95	Right-handed 310
Helix 48	48	I	101	114	Right-handed alpha
Helix 49	49	I	115	117	Right-handed 310
Helix 50	50	I	121	136	Right-handed alpha
Helix 51	51	I	146	150	Right-handed 310
Helix 52	52	I	154	159	Right-handed alpha
Helix 53	53	J	2	95	Right-handed 310
Helix 54	54	J	101	115	Right-handed alpha
Helix 55	55	J	121	137	Right-handed alpha
Helix 56	56	J	146	150	Right-handed 310
Helix 57	57	J	154	159	Right-handed alpha
Helix 58	58	J	209	213	Right-handed 310
Helix 59	59	K	101	115	Right-handed alpha
Helix 60	60	K	121	137	Right-handed alpha
Helix 61	61	K	146	150	Right-handed 310
Helix 62	62	K	209	213	Right-handed 310
Helix 63	63	L	101	115	Right-handed alpha
Helix 64	64	L	121	136	Right-handed alpha
Helix 65	65	L	146	150	Right-handed 310
Helix 66	66	L	154	159	Right-handed alpha
Helix 67	67	L	208	213	Right-handed 310

There are 24 sheets in PDB entry 2HD0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	B	200	203	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	B	200	203	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	191	196	anti-parallel
Strand 3	A	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	191	196	anti-parallel
Strand 3	A	201	203	anti-parallel
Strand 4	B	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	D	200	203	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	D	200	203	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	195	197	anti-parallel
Strand 3	C	200	202	anti-parallel
Strand 4	D	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	175	first strand
Strand 2	F	200	203	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	175	first strand
Strand 2	F	200	203	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	200	203	anti-parallel
Strand 4	F	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	H	200	202	anti-parallel
Strand 3	H	195	197	anti-parallel
Strand 4	H	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	188	first strand
Strand 2	G	191	197	anti-parallel
Strand 3	G	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	188	first strand
Strand 2	G	191	197	anti-parallel
Strand 3	G	200	203	anti-parallel
Strand 4	H	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	188	first strand
Strand 2	H	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	173	175	first strand
Strand 2	J	200	203	anti-parallel
Strand 3	J	191	197	anti-parallel
Strand 4	J	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	173	175	first strand
Strand 2	J	200	203	anti-parallel
Strand 3	J	191	197	anti-parallel
Strand 4	J	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	187	188	first strand
Strand 2	I	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	215	216	first strand
Strand 2	I	195	197	anti-parallel
Strand 3	I	200	202	anti-parallel
Strand 4	J	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	173	175	first strand
Strand 2	L	200	203	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	173	175	first strand
Strand 2	L	200	203	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	215	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	187	188	first strand
Strand 2	K	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	215	216	first strand
Strand 2	K	195	197	anti-parallel
Strand 3	K	200	202	anti-parallel
Strand 4	L	174	175	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2HD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
2HD0