Analysis of interatomic Contacts of Structural Units in PDB entry:
2HFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HFM entry

There are 3 chains in PDB entry 2HFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1LYS 107
H
 ASP 1ALA 113
Y
 LYS 1LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2HFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
86 90Right-handed 310
Helix 2
2
Y
4 15Right-handed alpha
Helix 3
3
Y
19 23Right-handed 310
Helix 4
4
Y
24 37Right-handed alpha
Helix 5
5
Y
81 85Right-handed 310
Helix 6
6
Y
88 101Right-handed alpha
Helix 7
7
Y
103 107Right-handed 310
Helix 8
8
Y
108 115Right-handed alpha
Helix 9
9
Y
119 124Right-handed 310
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There are 7 sheets in PDB entry 2HFM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
21 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 48first strand
Strand 2
L
34 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 48first strand
Strand 2
L
34 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
102 105anti-parallel
Strand 5
L
10 12parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 7first strand
Strand 2
H
16 22anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
67 68anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
35 39first strand
Strand 2
H
91 96anti-parallel
Strand 3
H
107 109anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
43 45first strand
Strand 2
Y
51 53anti-parallel
Strand 3
Y
58 59anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
64 65first strand
Strand 2
Y
78 79parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il