Analysis of interatomic Contacts of Structural Units in PDB entry:
2HIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HIM entry

There are 4 chains in PDB entry 2HIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 336
B
 VAL -5ASP 337
C
 LYS 3ASP 337
D
 VAL -5ASP 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2HIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 17Right-handed 310
Helix 2
2
A
29 36Right-handed alpha
Helix 3
3
A
37 43Right-handed 310
Helix 4
4
A
59 63Right-handed 310
Helix 5
5
A
64 79Right-handed alpha
Helix 6
6
A
80 82Right-handed 310
Helix 7
7
A
93 104Right-handed alpha
Helix 8
8
A
127 142Right-handed alpha
Helix 9
9
A
159 161Right-handed 310
Helix 10
10
A
223 230Right-handed alpha
Helix 11
11
A
250 263Right-handed alpha
Helix 12
12
A
287 292Right-handed alpha
Helix 13
13
A
301 315Right-handed alpha
Helix 14
14
A
318 327Right-handed alpha
Helix 15
15
B
14 17Right-handed 310
Helix 16
16
B
29 37Right-handed alpha
Helix 17
17
B
38 43Right-handed 310
Helix 18
18
B
59 63Right-handed 310
Helix 19
19
B
64 79Right-handed alpha
Helix 20
20
B
80 82Right-handed 310
Helix 21
21
B
93 104Right-handed alpha
Helix 22
22
B
127 142Right-handed alpha
Helix 23
23
B
159 161Right-handed 310
Helix 24
24
B
222 230Right-handed alpha
Helix 25
25
B
250 263Right-handed alpha
Helix 26
26
B
289 293Right-handed 310
Helix 27
27
B
301 314Right-handed alpha
Helix 28
28
B
318 327Right-handed alpha
Helix 29
29
C
14 17Right-handed 310
Helix 30
30
C
29 37Right-handed alpha
Helix 31
31
C
38 43Right-handed 310
Helix 32
32
C
59 63Right-handed 310
Helix 33
33
C
64 79Right-handed alpha
Helix 34
34
C
80 82Right-handed 310
Helix 35
35
C
93 104Right-handed alpha
Helix 36
36
C
127 142Right-handed alpha
Helix 37
37
C
159 161Right-handed 310
Helix 38
38
C
223 230Right-handed alpha
Helix 39
39
C
250 263Right-handed alpha
Helix 40
40
C
287 292Right-handed alpha
Helix 41
41
C
301 314Right-handed alpha
Helix 42
42
C
318 326Right-handed alpha
Helix 43
43
D
14 17Right-handed 310
Helix 44
44
D
29 37Right-handed alpha
Helix 45
45
D
38 43Right-handed 310
Helix 46
46
D
59 63Right-handed 310
Helix 47
47
D
64 79Right-handed alpha
Helix 48
48
D
80 82Right-handed 310
Helix 49
49
D
93 104Right-handed alpha
Helix 50
50
D
127 142Right-handed alpha
Helix 51
51
D
159 161Right-handed 310
Helix 52
52
D
222 230Right-handed alpha
Helix 53
53
D
250 263Right-handed alpha
Helix 54
54
D
289 293Right-handed 310
Helix 55
55
D
301 314Right-handed alpha
Helix 56
56
D
318 327Right-handed alpha
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There are 16 sheets in PDB entry 2HIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 58first strand
Strand 2
A
5 12parallel
Strand 3
A
84 88parallel
Strand 4
A
112 115parallel
Strand 5
A
147 151parallel
Strand 6
A
154 157anti-parallel
Strand 7
A
181 183anti-parallel
Strand 8
A
187 189anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
172 173anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
236 241parallel
Strand 3
A
266 271parallel
Strand 4
A
295 296parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 58first strand
Strand 2
B
5 12parallel
Strand 3
B
84 88parallel
Strand 4
B
112 115parallel
Strand 5
B
147 151parallel
Strand 6
B
154 157anti-parallel
Strand 7
B
181 183anti-parallel
Strand 8
B
187 189anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
203 204anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
172 173anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 216first strand
Strand 2
B
236 241parallel
Strand 3
B
266 271parallel
Strand 4
B
295 296parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 58first strand
Strand 2
C
5 12parallel
Strand 3
C
84 88parallel
Strand 4
C
112 115parallel
Strand 5
C
147 151parallel
Strand 6
C
154 157anti-parallel
Strand 7
C
181 183anti-parallel
Strand 8
C
187 189anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
203 204anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
172 173anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 216first strand
Strand 2
C
236 241parallel
Strand 3
C
266 271parallel
Strand 4
C
295 296parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 58first strand
Strand 2
D
5 12parallel
Strand 3
D
84 88parallel
Strand 4
D
112 115parallel
Strand 5
D
147 151parallel
Strand 6
D
154 157anti-parallel
Strand 7
D
181 183anti-parallel
Strand 8
D
187 189anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 106first strand
Strand 2
D
203 204anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 163first strand
Strand 2
D
172 173anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 216first strand
Strand 2
D
236 241parallel
Strand 3
D
266 271parallel
Strand 4
D
295 296parallel
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