Analysis of interatomic Contacts of Structural Units in PDB entry:
2HKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HKJ entry

There is 1 chain in PDB entry 2HKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ALA 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2HKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 19Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
27 46Right-handed alpha
Helix 4
4
A
47 51Right-handed 310
Helix 5
5
A
82 84Right-handed 310
Helix 6
6
A
85 92Right-handed alpha
Helix 7
7
A
111 123Right-handed alpha
Helix 8
8
A
179 198Right-handed alpha
Helix 9
9
A
232 236Right-handed 310
Helix 10
10
A
237 247Right-handed alpha
Helix 11
11
A
253 262Right-handed alpha
Helix 12
12
A
266 278Right-handed alpha
Helix 13
13
A
284 288Right-handed 310
Helix 14
14
A
289 303Right-handed alpha
Helix 15
15
A
310 314Right-handed 310
Helix 16
16
A
318 331Right-handed alpha
Helix 17
17
A
382 385Right-handed 310
Helix 18
18
A
386 395Right-handed alpha
Helix 19
19
A
396 401Right-handed 310
Helix 20
20
A
433 469Right-handed alpha
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There are 3 sheets in PDB entry 2HKJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 162first strand
Strand 2
A
138 147anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
169 177anti-parallel
Strand 5
A
69 76anti-parallel
Strand 6
A
55 64anti-parallel
Strand 7
A
202 206parallel
Strand 8
A
212 215anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
348 358anti-parallel
Strand 3
A
343 345anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
348 358anti-parallel
Strand 3
A
409 417anti-parallel
Strand 4
A
369 374parallel
Strand 5
A
377 379anti-parallel
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