Analysis of interatomic Contacts of Structural Units in PDB entry:
2HMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HMA entry

There is 1 chain in PDB entry 2HMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2HMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 6Right-handed 310
Helix 2
2
A
16 29Right-handed alpha
Helix 3
3
A
50 67Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
83 93Right-handed alpha
Helix 6
6
A
98 107Right-handed alpha
Helix 7
7
A
110 118Right-handed alpha
Helix 8
8
A
152 157Right-handed 310
Helix 9
9
A
160 165Right-handed alpha
Helix 10
10
A
175 186Right-handed alpha
Helix 11
11
A
206 213Right-handed alpha
Helix 12
12
A
235 239Right-handed 310
Helix 13
13
A
267 270Right-handed 310
Helix 14
14
A
280 282Right-handed 310
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There are 3 sheets in PDB entry 2HMA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
32 39parallel
Strand 3
A
8 12parallel
Strand 4
A
123 125parallel
Strand 5
A
167 168parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
140 144anti-parallel
Strand 3
A
353 364anti-parallel
Strand 4
A
345 350anti-parallel
Strand 5
A
303 310anti-parallel
Strand 6
A
318 324anti-parallel
Strand 7
A
329 338anti-parallel
Strand 8
A
284 295anti-parallel
Strand 9
A
353 364anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 233first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
271 276parallel
Strand 4
A
260 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il