Analysis of interatomic Contacts of Structural Units in PDB entry:
2HMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HMI entry

There are 6 chains in PDB entry 2HMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
A 801 C 819
F
G 821 A 838
A
PRO 1LYS 558
B
PRO 1GLU 430
C
ASP 1CYS 214
D
GLN 1ILE 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2HMI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
28 44Right-handed alpha
Helix 2
2
A
78 81Right-handed alpha
Helix 3
3
A
97 99Right-handed 310
Helix 4
4
A
114 116Right-handed 310
Helix 5
5
A
122 127Right-handed alpha
Helix 6
6
A
154 174Right-handed alpha
Helix 7
7
A
195 212Right-handed alpha
Helix 8
8
A
254 269Right-handed alpha
Helix 9
9
A
276 283Right-handed 310
Helix 10
10
A
294 311Right-handed 310
Helix 11
11
A
364 382Right-handed alpha
Helix 12
12
A
395 404Right-handed alpha
Helix 13
13
A
474 487Right-handed alpha
Helix 14
14
A
500 507Right-handed alpha
Helix 15
15
A
516 527Right-handed alpha
Helix 16
16
A
543 552Right-handed 310
Helix 17
17
B
28 44Right-handed alpha
Helix 18
18
B
78 83Right-handed alpha
Helix 19
19
B
88 91Right-handed alpha
Helix 20
20
B
98 100Right-handed 310
Helix 21
21
B
112 116Right-handed 310
Helix 22
22
B
125 127Right-handed 310
Helix 23
23
B
135 137Right-handed 310
Helix 24
24
B
154 174Right-handed alpha
Helix 25
25
B
195 211Right-handed alpha
Helix 26
26
B
228 232Right-handed 310
Helix 27
27
B
254 269Right-handed alpha
Helix 28
28
B
277 282Right-handed alpha
Helix 29
29
B
298 309Right-handed alpha
Helix 30
30
B
364 381Right-handed alpha
Helix 31
31
B
395 400Right-handed alpha
Helix 32
32
C
122 127Right-handed alpha
Helix 33
33
C
183 188Right-handed alpha
Helix 34
34
D
66 68Right-handed 310
Helix 35
35
D
75 77Right-handed 310
Helix 36
36
D
89 91Right-handed 310
Helix 37
37
D
181 183Right-handed 310
Helix 38
38
D
195 200Right-handed 310
Helix 39
39
D
210 212Right-handed 310
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There are 21 sheets in PDB entry 2HMI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 62first strand
Strand 2
A
73 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
414 417first strand
Strand 2
A
388 392parallel
Strand 3
A
326 333parallel
Strand 4
A
336 342anti-parallel
Strand 5
A
348 354anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
441 446first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
464 470anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
492 497first strand
Strand 2
A
530 535parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
59 63first strand
Strand 2
B
72 76anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 110first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
179 183anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
414 416first strand
Strand 2
B
388 391parallel
Strand 3
B
326 330parallel
Strand 4
B
337 342anti-parallel
Strand 5
B
348 354anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 13first strand
Strand 2
C
103 106parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
19 24first strand
Strand 2
C
70 75anti-parallel
Strand 3
C
62 67anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
85 90first strand
Strand 2
C
33 38anti-parallel
Strand 3
C
44 48anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 118first strand
Strand 2
C
129 137anti-parallel
Strand 3
C
175 182anti-parallel
Strand 4
C
159 163anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 148first strand
Strand 2
C
191 197anti-parallel
Strand 3
C
204 210anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
69 74anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
117 119first strand
Strand 2
D
93 99anti-parallel
Strand 3
D
35 42anti-parallel
Strand 4
D
47 54anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
130 134first strand
Strand 2
D
145 153anti-parallel
Strand 3
D
187 194anti-parallel
Strand 4
D
173 175anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
161 164first strand
Strand 2
D
204 209anti-parallel
Strand 3
D
214 219anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 101first strand
Strand 2
D
109 112anti-parallel
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