Analysis of interatomic Contacts of Structural Units in PDB entry:
2HNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2HNE entry

There are 4 chains in PDB entry 2HNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 434
B	MET 1	GLU 432
C	MET 1	LEU 434
D	MET 1	ALA 436

There are 89 helices in PDB entry 2HNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	19	Right-handed 310
Helix 2	2	A	59	69	Right-handed alpha
Helix 3	3	A	70	75	Right-handed alpha
Helix 4	4	A	78	85	Right-handed alpha
Helix 5	5	A	85	95	Right-handed alpha
Helix 6	6	A	96	102	Right-handed alpha
Helix 7	7	A	106	128	Right-handed alpha
Helix 8	8	A	131	138	Right-handed alpha
Helix 9	9	A	140	146	Right-handed alpha
Helix 10	10	A	158	170	Right-handed alpha
Helix 11	11	A	172	184	Right-handed alpha
Helix 12	12	A	198	212	Right-handed alpha
Helix 13	13	A	224	240	Right-handed alpha
Helix 14	14	A	254	263	Right-handed alpha
Helix 15	15	A	264	269	Right-handed 310
Helix 16	16	A	281	292	Right-handed alpha
Helix 17	17	A	305	315	Right-handed alpha
Helix 18	18	A	329	345	Right-handed alpha
Helix 19	19	A	356	372	Right-handed alpha
Helix 20	20	A	387	391	Right-handed 310
Helix 21	21	A	415	423	Right-handed alpha
Helix 22	22	A	427	434	Right-handed alpha
Helix 23	23	B	15	19	Right-handed 310
Helix 24	24	B	59	69	Right-handed alpha
Helix 25	25	B	70	75	Right-handed alpha
Helix 26	26	B	78	85	Right-handed alpha
Helix 27	27	B	85	95	Right-handed alpha
Helix 28	28	B	96	101	Right-handed alpha
Helix 29	29	B	106	128	Right-handed alpha
Helix 30	30	B	131	138	Right-handed alpha
Helix 31	31	B	140	146	Right-handed alpha
Helix 32	32	B	158	169	Right-handed alpha
Helix 33	33	B	172	184	Right-handed alpha
Helix 34	34	B	198	212	Right-handed alpha
Helix 35	35	B	224	240	Right-handed alpha
Helix 36	36	B	254	266	Right-handed alpha
Helix 37	37	B	267	269	Right-handed 310
Helix 38	38	B	281	293	Right-handed alpha
Helix 39	39	B	305	315	Right-handed alpha
Helix 40	40	B	329	345	Right-handed alpha
Helix 41	41	B	356	372	Right-handed alpha
Helix 42	42	B	387	391	Right-handed 310
Helix 43	43	B	415	423	Right-handed alpha
Helix 44	44	B	428	432	Right-handed 310
Helix 45	45	C	15	19	Right-handed 310
Helix 46	46	C	59	69	Right-handed alpha
Helix 47	47	C	70	75	Right-handed alpha
Helix 48	48	C	78	85	Right-handed alpha
Helix 49	49	C	85	95	Right-handed alpha
Helix 50	50	C	96	102	Right-handed alpha
Helix 51	51	C	106	129	Right-handed alpha
Helix 52	52	C	131	139	Right-handed alpha
Helix 53	53	C	140	146	Right-handed alpha
Helix 54	54	C	158	169	Right-handed alpha
Helix 55	55	C	172	184	Right-handed alpha
Helix 56	56	C	198	212	Right-handed alpha
Helix 57	57	C	224	240	Right-handed alpha
Helix 58	58	C	254	264	Right-handed alpha
Helix 59	59	C	265	269	Right-handed 310
Helix 60	60	C	281	292	Right-handed alpha
Helix 61	61	C	305	315	Right-handed alpha
Helix 62	62	C	329	345	Right-handed alpha
Helix 63	63	C	356	372	Right-handed alpha
Helix 64	64	C	387	391	Right-handed 310
Helix 65	65	C	415	423	Right-handed alpha
Helix 66	66	C	427	434	Right-handed alpha
Helix 67	67	D	15	19	Right-handed 310
Helix 68	68	D	59	69	Right-handed alpha
Helix 69	69	D	70	75	Right-handed alpha
Helix 70	70	D	78	85	Right-handed alpha
Helix 71	71	D	85	95	Right-handed alpha
Helix 72	72	D	96	102	Right-handed alpha
Helix 73	73	D	106	128	Right-handed alpha
Helix 74	74	D	131	138	Right-handed alpha
Helix 75	75	D	140	148	Right-handed alpha
Helix 76	76	D	158	170	Right-handed alpha
Helix 77	77	D	172	184	Right-handed alpha
Helix 78	78	D	191	194	Right-handed 310
Helix 79	79	D	198	212	Right-handed alpha
Helix 80	80	D	224	240	Right-handed alpha
Helix 81	81	D	254	264	Right-handed alpha
Helix 82	82	D	265	269	Right-handed 310
Helix 83	83	D	281	292	Right-handed alpha
Helix 84	84	D	305	315	Right-handed alpha
Helix 85	85	D	329	345	Right-handed alpha
Helix 86	86	D	356	372	Right-handed alpha
Helix 87	87	D	387	391	Right-handed 310
Helix 88	88	D	415	423	Right-handed alpha
Helix 89	89	D	427	434	Right-handed alpha

There are 13 sheets in PDB entry 2HNE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	13	first strand
Strand 2	A	33	41	anti-parallel
Strand 3	A	48	55	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	320	321	parallel
Strand 3	A	297	299	parallel
Strand 4	A	273	274	parallel
Strand 5	A	244	248	parallel
Strand 6	A	216	220	parallel
Strand 7	A	185	193	parallel
Strand 8	A	381	383	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	320	321	parallel
Strand 3	A	297	299	parallel
Strand 4	A	273	274	parallel
Strand 5	A	244	248	parallel
Strand 6	A	216	220	parallel
Strand 7	A	185	193	parallel
Strand 8	A	401	402	anti-parallel
Strand 9	A	397	398	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	13	first strand
Strand 2	B	33	41	anti-parallel
Strand 3	B	48	55	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	320	321	parallel
Strand 3	B	297	299	parallel
Strand 4	B	273	274	parallel
Strand 5	B	244	248	parallel
Strand 6	B	216	220	parallel
Strand 7	B	185	193	parallel
Strand 8	B	381	383	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	320	321	parallel
Strand 3	B	297	299	parallel
Strand 4	B	273	274	parallel
Strand 5	B	244	248	parallel
Strand 6	B	216	220	parallel
Strand 7	B	185	193	parallel
Strand 8	B	401	402	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	13	first strand
Strand 2	C	33	41	anti-parallel
Strand 3	C	48	55	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	320	321	parallel
Strand 3	C	297	299	parallel
Strand 4	C	273	274	parallel
Strand 5	C	244	248	parallel
Strand 6	C	216	220	parallel
Strand 7	C	185	193	parallel
Strand 8	C	381	383	parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	320	321	parallel
Strand 3	C	297	299	parallel
Strand 4	C	273	274	parallel
Strand 5	C	244	248	parallel
Strand 6	C	216	220	parallel
Strand 7	C	185	193	parallel
Strand 8	C	401	402	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	13	first strand
Strand 2	D	33	41	anti-parallel
Strand 3	D	49	55	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	383	first strand
Strand 2	D	185	189	parallel
Strand 3	D	401	402	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	220	first strand
Strand 2	D	244	248	parallel
Strand 3	D	273	274	parallel
Strand 4	D	297	298	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	321	first strand
Strand 2	D	347	348	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2HNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2HNE