Analysis of interatomic Contacts of Structural Units in PDB entry:
2HPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HPA entry

There are 4 chains in PDB entry 2HPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1001THR 1342
B
 LYS 2001THR 2342
C
 LYS 3001THR 3342
D
 LYS 4001THR 4342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 2HPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1028 1030Right-handed 310
Helix 2
2
A
1040 1056Right-handed alpha
Helix 3
3
A
1078 1091Right-handed alpha
Helix 4
4
A
1096 1098Right-handed 310
Helix 5
5
A
1116 1118Right-handed 310
Helix 6
6
A
1130 1141Right-handed alpha
Helix 7
7
A
1143 1163Right-handed alpha
Helix 8
8
A
1170 1176Right-handed alpha
Helix 9
9
A
1178 1186Right-handed alpha
Helix 10
10
A
1197 1215Right-handed alpha
Helix 11
11
A
1220 1226Right-handed alpha
Helix 12
12
A
1228 1244Right-handed 310
Helix 13
13
A
1258 1268Right-handed alpha
Helix 14
14
A
1321 1331Right-handed alpha
Helix 15
15
A
1336 1340Right-handed alpha
Helix 16
16
B
2028 2030Right-handed 310
Helix 17
17
B
2040 2057Right-handed alpha
Helix 18
18
B
2078 2091Right-handed alpha
Helix 19
19
B
2096 2098Right-handed 310
Helix 20
20
B
2116 2118Right-handed 310
Helix 21
21
B
2130 2141Right-handed alpha
Helix 22
22
B
2143 2163Right-handed alpha
Helix 23
23
B
2170 2176Right-handed alpha
Helix 24
24
B
2178 2186Right-handed alpha
Helix 25
25
B
2197 2215Right-handed alpha
Helix 26
26
B
2220 2226Right-handed alpha
Helix 27
27
B
2228 2244Right-handed alpha
Helix 28
28
B
2258 2268Right-handed alpha
Helix 29
29
B
2321 2327Right-handed alpha
Helix 30
30
B
2329 2331Right-handed 310
Helix 31
31
B
2336 2340Right-handed alpha
Helix 32
32
C
3028 3030Right-handed 310
Helix 33
33
C
3040 3056Right-handed alpha
Helix 34
34
C
3078 3091Right-handed alpha
Helix 35
35
C
3096 3098Right-handed 310
Helix 36
36
C
3116 3118Right-handed 310
Helix 37
37
C
3130 3141Right-handed alpha
Helix 38
38
C
3143 3163Right-handed alpha
Helix 39
39
C
3170 3176Right-handed alpha
Helix 40
40
C
3178 3187Right-handed alpha
Helix 41
41
C
3197 3215Right-handed alpha
Helix 42
42
C
3220 3226Right-handed alpha
Helix 43
43
C
3228 3244Right-handed alpha
Helix 44
44
C
3258 3268Right-handed alpha
Helix 45
45
C
3321 3331Right-handed alpha
Helix 46
46
C
3336 3340Right-handed alpha
Helix 47
47
D
4028 4030Right-handed 310
Helix 48
48
D
4040 4056Right-handed alpha
Helix 49
49
D
4078 4091Right-handed alpha
Helix 50
50
D
4096 4098Right-handed 310
Helix 51
51
D
4116 4118Right-handed 310
Helix 52
52
D
4130 4141Right-handed alpha
Helix 53
53
D
4143 4163Right-handed alpha
Helix 54
54
D
4170 4176Right-handed alpha
Helix 55
55
D
4178 4186Right-handed alpha
Helix 56
56
D
4197 4215Right-handed alpha
Helix 57
57
D
4220 4226Right-handed alpha
Helix 58
58
D
4228 4244Right-handed alpha
Helix 59
59
D
4258 4268Right-handed alpha
Helix 60
60
D
4321 4327Right-handed alpha
Helix 61
61
D
4329 4331Right-handed 310
Helix 62
62
D
4336 4340Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2HPA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1074first strand
Strand 2
A
1251 1256parallel
Strand 3
A
1003 1011parallel
Strand 4
A
1281 1289anti-parallel
Strand 5
A
1292 1300anti-parallel
Strand 6
A
1318 1320anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2070 2074first strand
Strand 2
B
2251 2256parallel
Strand 3
B
2002 2011parallel
Strand 4
B
2281 2289anti-parallel
Strand 5
B
2292 2300anti-parallel
Strand 6
B
2318 2320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2297 2299first strand
Strand 2
B
2308 2310anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3111 3114first strand
Strand 2
C
3070 3075parallel
Strand 3
C
3251 3256parallel
Strand 4
C
3003 3011parallel
Strand 5
C
3281 3289anti-parallel
Strand 6
C
3292 3300anti-parallel
Strand 7
C
3318 3320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3297 3299first strand
Strand 2
C
3308 3310anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4070 4074first strand
Strand 2
D
4251 4256parallel
Strand 3
D
4003 4011parallel
Strand 4
D
4281 4289anti-parallel
Strand 5
D
4292 4300anti-parallel
Strand 6
D
4318 4320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4297 4299first strand
Strand 2
D
4308 4310anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il