Analysis of interatomic Contacts of Structural Units in PDB entry:
2HPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HPD entry

There are 2 chains in PDB entry 2HPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 457
B
 THR 1GLY 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2HPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA
A
16 20Right-handed 310
Helix 2
A1A
A
25 37Right-handed alpha
Helix 3
BA
A
54 62Right-handed alpha
Helix 4
B'A
A
72 83Right-handed alpha
Helix 5
CA
A
93 104Right-handed alpha
Helix 6
B1A
A
105 108Right-handed 310
Helix 7
C1A
A
109 113Right-handed 310
Helix 8
A
A
114 132Right-handed alpha
Helix 9
EA
A
142 158Right-handed alpha
Helix 10
D1A
A
163 167Right-handed 310
Helix 11
FA
A
172 189Right-handed alpha
Helix 12
GA
A
197 226Right-handed alpha
Helix 13
HA
A
233 239Right-handed alpha
Helix 14
IA
A
250 282Right-handed alpha
Helix 15
JA
A
283 298Right-handed alpha
Helix 16
J'A
A
304 310Right-handed alpha
Helix 17
KA
A
311 325Right-handed alpha
Helix 18
K'A
A
357 361Right-handed alpha
Helix 19
E1A
A
375 379Right-handed 310
Helix 20
F1A
A
381 385Right-handed 310
Helix 21
LA
A
402 419Right-handed alpha
Helix 22
AB
B
16 20Right-handed 310
Helix 23
A1B
B
25 37Right-handed alpha
Helix 24
BB
B
54 62Right-handed alpha
Helix 25
B'B
B
72 83Right-handed alpha
Helix 26
CB
B
93 104Right-handed alpha
Helix 27
B1B
B
105 108Right-handed 310
Helix 28
C1B
B
109 113Right-handed 310
Helix 29
DB
B
114 132Right-handed alpha
Helix 30
EB
B
142 158Right-handed alpha
Helix 31
D1B
B
163 167Right-handed 310
Helix 32
FB
B
172 189Right-handed alpha
Helix 33
GB
B
197 226Right-handed alpha
Helix 34
HB
B
233 239Right-handed alpha
Helix 35
IB
B
250 282Right-handed alpha
Helix 36
JB
B
283 298Right-handed alpha
Helix 37
J'B
B
304 310Right-handed alpha
Helix 38
KB
B
311 325Right-handed alpha
Helix 39
K'B
B
357 361Right-handed alpha
Helix 40
E1B
B
375 379Right-handed 310
Helix 41
F1B
B
381 385Right-handed 310
Helix 42
LB
B
402 419Right-handed alpha
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There are 8 sheets in PDB entry 2HPD. Click on sheet of interest to get list of strands forming it: 1A, 2A, 3A, 4A, 1B, 2B, 3B, 4B,

There are 5 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
350 356parallel
Strand 4
A
329 335anti-parallel
Strand 5
A
66 70anti-parallel
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There are 2 strands in 2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
344 348anti-parallel
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There are 3 strands in 3A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
444 451anti-parallel
Strand 3
A
420 424anti-parallel
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There are 2 strands in 4A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 436first strand
Strand 2
A
438 442anti-parallel
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There are 5 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
350 356parallel
Strand 4
B
329 335anti-parallel
Strand 5
B
66 70anti-parallel
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There are 2 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 341first strand
Strand 2
B
344 348anti-parallel
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There are 3 strands in 3B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
444 451anti-parallel
Strand 3
B
420 424anti-parallel
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There are 2 strands in 4B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 436first strand
Strand 2
B
438 442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il