Analysis of interatomic Contacts of Structural Units in PDB entry:
2HPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HPM entry

There is 1 chain in PDB entry 2HPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 5PHE 1205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2HPM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
52 62Right-handed alpha
Helix 3
3
A
102 119Right-handed alpha
Helix 4
4
A
128 135Right-handed alpha
Helix 5
5
A
148 156Right-handed alpha
Helix 6
6
A
158 174Right-handed alpha
Helix 7
7
A
186 203Right-handed alpha
Helix 8
8
A
217 219Right-handed 310
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
253 261Right-handed alpha
Helix 11
11
A
262 267Right-handed alpha
Helix 12
12
A
271 280Right-handed alpha
Helix 13
13
A
305 322Right-handed alpha
Helix 14
14
A
327 336Right-handed alpha
Helix 15
15
A
347 355Right-handed alpha
Helix 16
16
A
358 363Right-handed alpha
Helix 17
17
A
379 398Right-handed alpha
Helix 18
18
A
399 416Right-handed alpha
Helix 19
19
A
424 429Right-handed 310
Helix 20
20
A
430 436Right-handed alpha
Helix 21
21
A
472 485Right-handed alpha
Helix 22
22
A
499 511Right-handed alpha
Helix 23
23
A
514 523Right-handed alpha
Helix 24
24
A
545 549Right-handed 310
Helix 25
25
A
552 566Right-handed alpha
Helix 26
26
A
585 589Right-handed 310
Helix 27
27
A
606 613Right-handed alpha
Helix 28
28
A
622 639Right-handed alpha
Helix 29
29
A
644 648Right-handed 310
Helix 30
30
A
652 662Right-handed alpha
Helix 31
31
A
672 683Right-handed alpha
Helix 32
32
A
686 697Right-handed alpha
Helix 33
33
A
700 702Right-handed 310
Helix 34
34
A
703 713Right-handed alpha
Helix 35
35
A
726 736Right-handed alpha
Helix 36
36
A
743 755Right-handed alpha
Helix 37
37
A
758 771Right-handed alpha
Helix 38
38
A
776 792Right-handed alpha
Helix 39
39
A
795 809Right-handed alpha
Helix 40
40
A
814 835Right-handed alpha
Helix 41
41
A
835 847Right-handed alpha
Helix 42
42
A
850 863Right-handed alpha
Helix 43
43
A
898 912Right-handed alpha
Helix 44
44
A
917 923Right-handed alpha
Helix 45
45
A
931 941Right-handed alpha
Helix 46
46
A
942 948Right-handed 310
Helix 47
47
A
949 972Right-handed alpha
Helix 48
48
A
994 1007Right-handed alpha
Helix 49
49
A
1013 1018Right-handed 310
Helix 50
50
A
1019 1025Right-handed alpha
Helix 51
51
A
1028 1037Right-handed alpha
Helix 52
52
A
1121 1125Right-handed alpha
Helix 53
53
A
1146 1154Right-handed alpha
Helix 54
54
A
1184 1190Right-handed alpha
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There are 7 sheets in PDB entry 2HPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 47first strand
Strand 2
A
66 72parallel
Strand 3
A
97 100anti-parallel
Strand 4
A
139 142anti-parallel
Strand 5
A
177 181parallel
Strand 6
A
207 209parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 94first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
126 127parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
466 468first strand
Strand 2
A
615 621parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
569 574anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
466 468first strand
Strand 2
A
615 621parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
600 605parallel
Strand 6
A
592 594anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
868 869first strand
Strand 2
A
886 888parallel
Strand 3
A
881 883anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1075 1078first strand
Strand 2
A
1069 1072anti-parallel
Strand 3
A
1044 1051anti-parallel
Strand 4
A
1098 1104anti-parallel
Strand 5
A
1114 1120anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1170 1175first strand
Strand 2
A
1161 1167anti-parallel
Strand 3
A
1129 1135parallel
Strand 4
A
1195 1200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il