Analysis of interatomic Contacts of Structural Units in PDB entry:
2HVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HVQ entry

There are 2 chains in PDB entry 2HVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 34
A
 ILE 36ALA 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2HVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
68 84Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
134 146Right-handed alpha
Helix 5
5
A
157 162Right-handed alpha
Helix 6
6
A
171 183Right-handed alpha
Helix 7
7
A
183 190Right-handed alpha
Helix 8
8
A
228 234Right-handed alpha
Helix 9
9
A
248 259Right-handed alpha
Helix 10
10
A
260 262Right-handed 310
Helix 11
11
A
263 273Right-handed alpha
Helix 12
12
A
281 300Right-handed alpha
Helix 13
13
A
309 324Right-handed alpha
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There are 3 sheets in PDB entry 2HVQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
224 227parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
152 156anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
91 101anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
130 132anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
91 101anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
148 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il