Analysis of interatomic Contacts of Structural Units in PDB entry:
2HY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HY5 entry

There are 3 chains in PDB entry 2HY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 130
B
 VAL 205PHE 336
C
 SER 402LEU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2HY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
41 48Right-handed 310
Helix 3
3
A
59 72Right-handed alpha
Helix 4
4
A
79 86Right-handed alpha
Helix 5
5
A
89 97Right-handed alpha
Helix 6
6
A
112 122Right-handed alpha
Helix 7
7
B
220 233Right-handed alpha
Helix 8
8
B
234 236Right-handed 310
Helix 9
9
B
245 252Right-handed 310
Helix 10
10
B
257 261Right-handed 310
Helix 11
11
B
265 276Right-handed 310
Helix 12
12
B
284 290Right-handed alpha
Helix 13
13
B
293 297Right-handed 310
Helix 14
14
B
319 330Right-handed alpha
Helix 15
15
C
415 424Right-handed alpha
Helix 16
16
C
434 441Right-handed 310
Helix 17
17
C
446 454Right-handed alpha
Helix 18
18
C
463 469Right-handed alpha
Helix 19
19
C
472 476Right-handed 310
Helix 20
20
C
484 495Right-handed alpha
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There are 4 sheets in PDB entry 2HY5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
75 78parallel
Strand 3
A
33 39parallel
Strand 4
A
2 7parallel
Strand 5
A
124 128parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
279 283parallel
Strand 3
B
238 243parallel
Strand 4
B
207 212parallel
Strand 5
B
332 335parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
310 311anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
481 483first strand
Strand 2
C
458 462parallel
Strand 3
C
429 432parallel
Strand 4
C
403 407parallel
Strand 5
C
497 501parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il