Analysis of interatomic Contacts of Structural Units in PDB entry:
2HYB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2HYB entry

There are 18 chains in PDB entry 2HYB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 130
B	VAL 205	PHE 336
C	SER 402	LEU 502
D	MET 1001	ASP 1130
E	VAL 1205	PHE 1336
F	SER 1402	LEU 1502
G	MET 2001	ASP 2130
H	VAL 2205	PHE 2336
I	SER 2402	LEU 2502
J	MET 3001	ASP 3130
K	VAL 3205	PHE 3336
L	SER 3402	LEU 3502
M	MET 4001	ASP 4130
N	VAL 4205	PHE 4336
O	SER 4402	LEU 4502
P	MET 5001	ASP 5130
Q	VAL 5205	PHE 5336
R	SER 5402	LEU 5502

There are112 helices in PDB entry 2HYB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	30	Right-handed alpha
Helix 2	2	A	41	48	Right-handed 310
Helix 3	3	A	59	72	Right-handed alpha
Helix 4	4	A	79	86	Right-handed alpha
Helix 5	5	A	89	97	Right-handed alpha
Helix 6	6	A	112	122	Right-handed alpha
Helix 7	7	B	220	234	Right-handed alpha
Helix 8	8	B	245	252	Right-handed 310
Helix 9	9	B	265	276	Right-handed 310
Helix 10	10	B	284	290	Right-handed alpha
Helix 11	11	B	293	297	Right-handed 310
Helix 12	12	B	319	330	Right-handed alpha
Helix 13	13	C	415	424	Right-handed alpha
Helix 14	14	C	434	441	Right-handed 310
Helix 15	15	C	446	454	Right-handed alpha
Helix 16	16	C	463	469	Right-handed alpha
Helix 17	17	C	472	476	Right-handed 310
Helix 18	18	C	484	495	Right-handed alpha
Helix 19	19	D	1015	1030	Right-handed alpha
Helix 20	20	D	1041	1047	Right-handed 310
Helix 21	21	D	1059	1072	Right-handed alpha
Helix 22	22	D	1079	1086	Right-handed alpha
Helix 23	23	D	1089	1096	Right-handed alpha
Helix 24	24	D	1112	1122	Right-handed alpha
Helix 25	25	E	1220	1234	Right-handed alpha
Helix 26	26	E	1245	1252	Right-handed 310
Helix 27	27	E	1257	1261	Right-handed 310
Helix 28	28	E	1265	1276	Right-handed 310
Helix 29	29	E	1284	1290	Right-handed alpha
Helix 30	30	E	1293	1297	Right-handed 310
Helix 31	31	E	1319	1330	Right-handed alpha
Helix 32	32	F	1415	1424	Right-handed alpha
Helix 33	33	F	1434	1441	Right-handed 310
Helix 34	34	F	1446	1454	Right-handed alpha
Helix 35	35	F	1463	1469	Right-handed alpha
Helix 36	36	F	1472	1476	Right-handed 310
Helix 37	37	F	1484	1495	Right-handed alpha
Helix 38	38	G	2015	2030	Right-handed alpha
Helix 39	39	G	2041	2047	Right-handed 310
Helix 40	40	G	2059	2072	Right-handed alpha
Helix 41	41	G	2079	2086	Right-handed alpha
Helix 42	42	G	2089	2097	Right-handed alpha
Helix 43	43	G	2112	2122	Right-handed alpha
Helix 44	44	H	2220	2234	Right-handed alpha
Helix 45	45	H	2245	2252	Right-handed 310
Helix 46	46	H	2265	2276	Right-handed 310
Helix 47	47	H	2284	2290	Right-handed alpha
Helix 48	48	H	2293	2297	Right-handed 310
Helix 49	49	H	2319	2330	Right-handed alpha
Helix 50	50	I	2415	2424	Right-handed alpha
Helix 51	51	I	2434	2440	Right-handed 310
Helix 52	52	I	2446	2454	Right-handed alpha
Helix 53	53	I	2463	2469	Right-handed alpha
Helix 54	54	I	2472	2476	Right-handed 310
Helix 55	55	I	2484	2495	Right-handed alpha
Helix 56	56	J	3015	3030	Right-handed alpha
Helix 57	57	J	3041	3048	Right-handed 310
Helix 58	58	J	3059	3071	Right-handed alpha
Helix 59	59	J	3079	3086	Right-handed alpha
Helix 60	60	J	3089	3097	Right-handed alpha
Helix 61	61	J	3112	3122	Right-handed alpha
Helix 62	62	K	3220	3234	Right-handed alpha
Helix 63	63	K	3245	3252	Right-handed 310
Helix 64	64	K	3257	3261	Right-handed 310
Helix 65	65	K	3265	3276	Right-handed 310
Helix 66	66	K	3284	3290	Right-handed alpha
Helix 67	67	K	3293	3297	Right-handed 310
Helix 68	68	K	3319	3330	Right-handed alpha
Helix 69	69	L	3415	3424	Right-handed alpha
Helix 70	70	L	3434	3441	Right-handed 310
Helix 71	71	L	3446	3454	Right-handed alpha
Helix 72	72	L	3463	3469	Right-handed alpha
Helix 73	73	L	3472	3476	Right-handed 310
Helix 74	74	L	3484	3495	Right-handed alpha
Helix 75	75	M	4015	4029	Right-handed alpha
Helix 76	76	M	4041	4048	Right-handed 310
Helix 77	77	M	4059	4071	Right-handed alpha
Helix 78	78	M	4079	4086	Right-handed alpha
Helix 79	79	M	4089	4097	Right-handed alpha
Helix 80	80	M	4112	4122	Right-handed alpha
Helix 81	81	N	4220	4234	Right-handed alpha
Helix 82	82	N	4245	4252	Right-handed 310
Helix 83	83	N	4257	4261	Right-handed 310
Helix 84	84	N	4265	4276	Right-handed 310
Helix 85	85	N	4284	4291	Right-handed alpha
Helix 86	86	N	4293	4297	Right-handed 310
Helix 87	87	N	4319	4330	Right-handed alpha
Helix 88	88	O	4415	4424	Right-handed alpha
Helix 89	89	O	4434	4441	Right-handed 310
Helix 90	90	O	4446	4454	Right-handed alpha
Helix 91	91	O	4463	4469	Right-handed alpha
Helix 92	92	O	4472	4476	Right-handed 310
Helix 93	93	O	4484	4495	Right-handed alpha
Helix 94	94	P	5015	5030	Right-handed alpha
Helix 95	95	P	5041	5048	Right-handed 310
Helix 96	96	P	5059	5071	Right-handed alpha
Helix 97	97	P	5079	5086	Right-handed alpha
Helix 98	98	P	5089	5097	Right-handed alpha
Helix 99	99	P	5112	5122	Right-handed alpha
Helix 100	100	Q	5220	5234	Right-handed alpha
Helix 101	101	Q	5245	5252	Right-handed 310
Helix 102	102	Q	5257	5261	Right-handed 310
Helix 103	103	Q	5265	5276	Right-handed 310
Helix 104	104	Q	5284	5290	Right-handed alpha
Helix 105	105	Q	5293	5297	Right-handed 310
Helix 106	106	Q	5319	5330	Right-handed alpha
Helix 107	107	R	5415	5424	Right-handed alpha
Helix 108	108	R	5434	5441	Right-handed 310
Helix 109	109	R	5446	5454	Right-handed alpha
Helix 110	110	R	5463	5469	Right-handed alpha
Helix 111	111	R	5472	5476	Right-handed 310
Helix 112	112	R	5484	5495	Right-handed alpha

There are 24 sheets in PDB entry 2HYB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	75	78	parallel
Strand 3	A	33	39	parallel
Strand 4	A	2	7	parallel
Strand 5	A	124	128	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	279	283	parallel
Strand 3	B	238	243	parallel
Strand 4	B	207	212	parallel
Strand 5	B	332	335	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	310	311	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	483	first strand
Strand 2	C	458	462	parallel
Strand 3	C	429	432	parallel
Strand 4	C	403	407	parallel
Strand 5	C	497	501	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1108	1110	first strand
Strand 2	D	1075	1078	parallel
Strand 3	D	1033	1039	parallel
Strand 4	D	1002	1007	parallel
Strand 5	D	1124	1128	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1315	1318	first strand
Strand 2	E	1279	1283	parallel
Strand 3	E	1238	1243	parallel
Strand 4	E	1207	1212	parallel
Strand 5	E	1332	1335	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1302	1303	first strand
Strand 2	E	1310	1311	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1481	1483	first strand
Strand 2	F	1458	1462	parallel
Strand 3	F	1429	1432	parallel
Strand 4	F	1403	1407	parallel
Strand 5	F	1497	1501	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2108	2110	first strand
Strand 2	G	2075	2078	parallel
Strand 3	G	2033	2039	parallel
Strand 4	G	2002	2007	parallel
Strand 5	G	2124	2128	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2315	2318	first strand
Strand 2	H	2279	2283	parallel
Strand 3	H	2238	2243	parallel
Strand 4	H	2207	2212	parallel
Strand 5	H	2332	2335	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2302	2303	first strand
Strand 2	H	2310	2311	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2481	2483	first strand
Strand 2	I	2458	2462	parallel
Strand 3	I	2429	2432	parallel
Strand 4	I	2403	2407	parallel
Strand 5	I	2497	2501	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3108	3110	first strand
Strand 2	J	3075	3078	parallel
Strand 3	J	3033	3039	parallel
Strand 4	J	3002	3007	parallel
Strand 5	J	3124	3128	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3315	3318	first strand
Strand 2	K	3279	3283	parallel
Strand 3	K	3238	3243	parallel
Strand 4	K	3207	3212	parallel
Strand 5	K	3332	3335	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3302	3303	first strand
Strand 2	K	3310	3311	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3481	3483	first strand
Strand 2	L	3458	3462	parallel
Strand 3	L	3429	3432	parallel
Strand 4	L	3403	3407	parallel
Strand 5	L	3497	3501	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4108	4110	first strand
Strand 2	M	4075	4078	parallel
Strand 3	M	4033	4039	parallel
Strand 4	M	4002	4007	parallel
Strand 5	M	4124	4128	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4315	4318	first strand
Strand 2	N	4279	4283	parallel
Strand 3	N	4238	4243	parallel
Strand 4	N	4207	4212	parallel
Strand 5	N	4332	4335	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4302	4303	first strand
Strand 2	N	4310	4311	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4481	4483	first strand
Strand 2	O	4458	4462	parallel
Strand 3	O	4429	4432	parallel
Strand 4	O	4403	4407	parallel
Strand 5	O	4497	4501	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5108	5110	first strand
Strand 2	P	5075	5078	parallel
Strand 3	P	5033	5039	parallel
Strand 4	P	5002	5007	parallel
Strand 5	P	5124	5128	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5315	5318	first strand
Strand 2	Q	5279	5283	parallel
Strand 3	Q	5238	5243	parallel
Strand 4	Q	5207	5212	parallel
Strand 5	Q	5332	5335	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5302	5303	first strand
Strand 2	Q	5310	5311	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5481	5483	first strand
Strand 2	R	5458	5462	parallel
Strand 3	R	5429	5432	parallel
Strand 4	R	5403	5407	parallel
Strand 5	R	5497	5501	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2HYB

Analysis of interatomic Contacts of Structural Units in PDB entry:
2HYB