Analysis of interatomic Contacts of Structural Units in PDB entry:
2HYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2HYE entry

There are 4 chains in PDB entry 2HYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1140
B	PRO 10	THR 222
C	LYS 41	ALA 759
D	LYS 19	HIS 108

There are 47 helices in PDB entry 2HYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	250	255	Right-handed alpha
Helix 2	2	A	341	345	Right-handed 310
Helix 3	3	A	755	759	Right-handed 310
Helix 4	4	A	1044	1062	Right-handed alpha
Helix 5	5	A	1069	1074	Right-handed alpha
Helix 6	6	A	1092	1096	Right-handed 310
Helix 7	7	A	1101	1110	Right-handed alpha
Helix 8	8	A	1125	1137	Right-handed alpha
Helix 9	9	A	1138	1140	Right-handed 310
Helix 10	10	B	22	33	Right-handed alpha
Helix 11	11	B	126	138	Right-handed alpha
Helix 12	12	C	61	72	Right-handed alpha
Helix 13	13	C	82	94	Right-handed alpha
Helix 14	14	C	98	122	Right-handed alpha
Helix 15	15	C	129	153	Right-handed alpha
Helix 16	16	C	153	158	Right-handed alpha
Helix 17	17	C	169	181	Right-handed alpha
Helix 18	18	C	188	191	Right-handed 310
Helix 19	19	C	192	202	Right-handed alpha
Helix 20	20	C	210	224	Right-handed alpha
Helix 21	21	C	231	254	Right-handed alpha
Helix 22	22	C	255	270	Right-handed alpha
Helix 23	23	C	270	275	Right-handed alpha
Helix 24	24	C	282	295	Right-handed alpha
Helix 25	25	C	299	305	Right-handed alpha
Helix 26	26	C	306	312	Right-handed alpha
Helix 27	27	C	315	329	Right-handed alpha
Helix 28	28	C	331	353	Right-handed alpha
Helix 29	29	C	354	358	Right-handed 310
Helix 30	30	C	360	378	Right-handed alpha
Helix 31	31	C	383	399	Right-handed alpha
Helix 32	32	C	403	418	Right-handed alpha
Helix 33	33	C	420	424	Right-handed 310
Helix 34	34	C	428	441	Right-handed alpha
Helix 35	35	C	445	463	Right-handed alpha
Helix 36	36	C	468	481	Right-handed alpha
Helix 37	37	C	488	514	Right-handed alpha
Helix 38	38	C	544	560	Right-handed alpha
Helix 39	39	C	570	573	Right-handed 310
Helix 40	40	C	593	602	Right-handed alpha
Helix 41	41	C	610	617	Right-handed alpha
Helix 42	42	C	620	630	Right-handed alpha
Helix 43	43	C	670	675	Right-handed 310
Helix 44	44	C	677	707	Right-handed alpha
Helix 45	45	C	712	723	Right-handed alpha
Helix 46	46	C	728	742	Right-handed alpha
Helix 47	47	D	64	68	Right-handed 310

There are 35 sheets in PDB entry 2HYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1009	first strand
Strand 2	A	1024	1032	anti-parallel
Strand 3	A	1037	1043	anti-parallel
Strand 4	A	4	10	anti-parallel
Strand 5	A	1088	1090	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	30	34	anti-parallel
Strand 3	A	38	44	anti-parallel
Strand 4	A	49	56	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	98	107	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	170	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	187	189	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	201	202	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	237	240	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	299	307	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	321	326	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	347	353	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	365	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	386	393	anti-parallel
Strand 4	A	709	716	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	401	first strand
Strand 2	A	699	704	anti-parallel
Strand 3	A	690	694	anti-parallel
Strand 4	A	678	682	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	424	427	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	442	445	anti-parallel
Strand 5	C	45	46	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	463	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	476	480	anti-parallel
Strand 4	A	486	488	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	507	512	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	525	533	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	555	560	anti-parallel
Strand 3	A	568	570	anti-parallel
Strand 4	A	575	578	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	605	606	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	595	first strand
Strand 2	A	600	603	anti-parallel
Strand 3	A	610	614	anti-parallel
Strand 4	A	627	630	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	647	648	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	666	667	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	727	first strand
Strand 2	A	732	736	anti-parallel
Strand 3	A	790	795	anti-parallel
Strand 4	A	801	806	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	750	first strand
Strand 2	A	739	744	anti-parallel
Strand 3	A	786	788	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	819	first strand
Strand 2	A	828	835	anti-parallel
Strand 3	A	846	851	anti-parallel
Strand 4	A	863	866	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	876	first strand
Strand 2	A	879	883	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	893	first strand
Strand 2	A	899	903	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	913	first strand
Strand 2	A	920	925	anti-parallel
Strand 3	A	930	936	anti-parallel
Strand 4	A	941	942	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	913	first strand
Strand 2	A	920	925	anti-parallel
Strand 3	A	930	936	anti-parallel
Strand 4	A	946	947	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	961	first strand
Strand 2	A	964	969	anti-parallel
Strand 3	A	973	979	anti-parallel
Strand 4	A	992	999	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	42	43	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	143	146	anti-parallel
Strand 3	B	173	178	anti-parallel
Strand 4	B	185	190	anti-parallel
Strand 5	B	111	114	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	202	203	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	529	first strand
Strand 2	D	24	35	parallel
Strand 3	C	565	566	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	529	first strand
Strand 2	D	24	35	parallel
Strand 3	C	575	579	anti-parallel
Strand 4	C	588	592	anti-parallel
Strand 5	C	667	668	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	609	first strand
Strand 2	C	653	656	anti-parallel
Strand 3	C	639	641	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	711	first strand
Strand 2	C	754	756	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	78	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2HYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2HYE