Analysis of interatomic Contacts of Structural Units in PDB entry:
2HZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2HZM entry

There are 8 chains in PDB entry 2HZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	LEU 210
B	VAL 2	HIS 313
C	LYS 3	GLU 209
D	VAL 2	HIS 313
E	GLY 2	LEU 210
F	VAL 2	HIS 313
G	GLY 2	LEU 210
H	VAL 2	HIS 313

There are 61 helices in PDB entry 2HZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	25	Right-handed alpha
Helix 2	2	A	26	28	Right-handed 310
Helix 3	3	A	83	87	Right-handed 310
Helix 4	4	A	88	94	Right-handed alpha
Helix 5	5	A	103	112	Right-handed alpha
Helix 6	6	A	159	161	Right-handed 310
Helix 7	7	A	162	177	Right-handed alpha
Helix 8	8	A	195	209	Right-handed alpha
Helix 9	9	B	15	28	Right-handed alpha
Helix 10	10	B	45	48	Right-handed 310
Helix 11	11	B	71	75	Right-handed 310
Helix 12	12	B	86	93	Right-handed 310
Helix 13	13	B	199	207	Right-handed alpha
Helix 14	14	B	225	227	Right-handed 310
Helix 15	15	B	264	282	Right-handed alpha
Helix 16	16	B	292	298	Right-handed alpha
Helix 17	17	B	299	302	Right-handed 310
Helix 18	18	B	304	313	Right-handed alpha
Helix 19	19	C	15	24	Right-handed alpha
Helix 20	20	C	83	87	Right-handed 310
Helix 21	21	C	88	94	Right-handed alpha
Helix 22	22	C	103	112	Right-handed alpha
Helix 23	23	C	162	177	Right-handed alpha
Helix 24	24	C	195	209	Right-handed alpha
Helix 25	25	D	15	28	Right-handed alpha
Helix 26	26	D	71	75	Right-handed 310
Helix 27	27	D	86	91	Right-handed 310
Helix 28	28	D	172	176	Right-handed 310
Helix 29	29	D	199	208	Right-handed alpha
Helix 30	30	D	225	227	Right-handed 310
Helix 31	31	D	266	283	Right-handed alpha
Helix 32	32	D	292	297	Right-handed alpha
Helix 33	33	D	304	313	Right-handed alpha
Helix 34	34	E	13	25	Right-handed alpha
Helix 35	35	E	83	87	Right-handed 310
Helix 36	36	E	88	94	Right-handed alpha
Helix 37	37	E	103	112	Right-handed alpha
Helix 38	38	E	163	175	Right-handed alpha
Helix 39	39	E	195	209	Right-handed alpha
Helix 40	40	F	15	28	Right-handed alpha
Helix 41	41	F	71	75	Right-handed 310
Helix 42	42	F	77	82	Right-handed alpha
Helix 43	43	F	85	93	Right-handed 310
Helix 44	44	F	199	206	Right-handed alpha
Helix 45	45	F	264	283	Right-handed alpha
Helix 46	46	F	292	298	Right-handed alpha
Helix 47	47	F	299	302	Right-handed 310
Helix 48	48	F	304	311	Right-handed alpha
Helix 49	49	G	14	23	Right-handed alpha
Helix 50	50	G	83	87	Right-handed 310
Helix 51	51	G	88	94	Right-handed alpha
Helix 52	52	G	103	112	Right-handed alpha
Helix 53	53	G	163	171	Right-handed alpha
Helix 54	54	G	196	209	Right-handed alpha
Helix 55	55	H	15	28	Right-handed alpha
Helix 56	56	H	71	76	Right-handed alpha
Helix 57	57	H	84	95	Right-handed alpha
Helix 58	58	H	199	206	Right-handed alpha
Helix 59	59	H	264	283	Right-handed alpha
Helix 60	60	H	298	302	Right-handed 310
Helix 61	61	H	304	313	Right-handed alpha

There are 14 sheets in PDB entry 2HZM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	183	185	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	147	157	anti-parallel
Strand 5	A	135	144	anti-parallel
Strand 6	A	116	132	anti-parallel
Strand 7	A	30	31	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	132	first strand
Strand 2	A	35	44	anti-parallel
Strand 3	A	56	63	anti-parallel
Strand 4	A	67	73	anti-parallel
Strand 5	A	76	81	anti-parallel
Strand 6	B	181	195	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	64	68	anti-parallel
Strand 3	B	32	43	anti-parallel
Strand 4	B	209	223	anti-parallel
Strand 5	B	229	239	anti-parallel
Strand 6	B	242	245	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	239	first strand
Strand 2	B	250	259	anti-parallel
Strand 3	B	3	12	anti-parallel
Strand 4	B	181	195	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	9	first strand
Strand 2	C	183	185	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	C	147	156	anti-parallel
Strand 5	C	135	144	anti-parallel
Strand 6	C	116	132	anti-parallel
Strand 7	C	28	31	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	132	first strand
Strand 2	C	35	44	anti-parallel
Strand 3	C	56	63	anti-parallel
Strand 4	C	67	73	anti-parallel
Strand 5	C	76	81	anti-parallel
Strand 6	D	181	195	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	170	first strand
Strand 2	D	64	68	anti-parallel
Strand 3	D	32	43	anti-parallel
Strand 4	D	209	223	anti-parallel
Strand 5	D	229	238	anti-parallel
Strand 6	D	243	245	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	238	first strand
Strand 2	D	250	259	anti-parallel
Strand 3	D	3	12	anti-parallel
Strand 4	D	181	195	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	135	144	anti-parallel
Strand 3	E	147	156	anti-parallel
Strand 4	E	4	9	anti-parallel
Strand 5	E	183	185	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	125	first strand
Strand 2	E	36	44	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	68	72	anti-parallel
Strand 5	E	76	81	anti-parallel
Strand 6	F	181	195	anti-parallel
Strand 7	F	3	12	anti-parallel
Strand 8	F	250	259	anti-parallel
Strand 9	F	229	237	anti-parallel
Strand 10	F	244	245	anti-parallel

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There are 12 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	125	first strand
Strand 2	E	36	44	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	68	72	anti-parallel
Strand 5	E	76	81	anti-parallel
Strand 6	F	181	195	anti-parallel
Strand 7	F	164	170	anti-parallel
Strand 8	F	64	68	anti-parallel
Strand 9	F	32	43	anti-parallel
Strand 10	F	209	223	anti-parallel
Strand 11	F	229	237	anti-parallel
Strand 12	F	244	245	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	128	132	anti-parallel
Strand 3	G	135	143	anti-parallel
Strand 4	G	148	156	anti-parallel
Strand 5	G	4	9	anti-parallel
Strand 6	G	183	185	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	123	first strand
Strand 2	G	36	44	anti-parallel
Strand 3	G	56	63	anti-parallel
Strand 4	G	67	72	anti-parallel
Strand 5	G	76	81	anti-parallel
Strand 6	H	181	195	anti-parallel
Strand 7	H	3	12	anti-parallel
Strand 8	H	250	259	anti-parallel
Strand 9	H	229	238	anti-parallel
Strand 10	H	243	245	anti-parallel

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There are 12 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	123	first strand
Strand 2	G	36	44	anti-parallel
Strand 3	G	56	63	anti-parallel
Strand 4	G	67	72	anti-parallel
Strand 5	G	76	81	anti-parallel
Strand 6	H	181	195	anti-parallel
Strand 7	H	164	170	anti-parallel
Strand 8	H	64	68	anti-parallel
Strand 9	H	32	43	anti-parallel
Strand 10	H	209	223	anti-parallel
Strand 11	H	229	238	anti-parallel
Strand 12	H	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2HZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2HZM