Analysis of interatomic Contacts of Structural Units in PDB entry:
2I07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2I07 entry

There are 2 chains in PDB entry 2I07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 642
B	ASP 730	ASN 1641

There are 29 helices in PDB entry 2I07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	59	Right-handed 310
Helix 2	2	A	281	288	Right-handed alpha
Helix 3	3	A	289	289	Right-handed 310
Helix 4	4	A	293	298	Right-handed 310
Helix 5	5	A	461	465	Right-handed 310
Helix 6	6	A	579	584	Right-handed alpha
Helix 7	7	A	590	601	Right-handed alpha
Helix 8	8	A	612	621	Right-handed alpha
Helix 9	9	B	735	739	Right-handed 310
Helix 10	10	B	974	982	Right-handed 310
Helix 11	11	B	990	1009	Right-handed alpha
Helix 12	12	B	1011	1016	Right-handed alpha
Helix 13	13	B	1018	1034	Right-handed alpha
Helix 14	14	B	1053	1067	Right-handed alpha
Helix 15	15	B	1074	1089	Right-handed alpha
Helix 16	16	B	1116	1131	Right-handed alpha
Helix 17	17	B	1133	1137	Right-handed 310
Helix 18	18	B	1142	1157	Right-handed alpha
Helix 19	19	B	1163	1176	Right-handed alpha
Helix 20	20	B	1181	1190	Right-handed alpha
Helix 21	21	B	1192	1196	Right-handed 310
Helix 22	22	B	1203	1222	Right-handed alpha
Helix 23	23	B	1226	1236	Right-handed alpha
Helix 24	24	B	1246	1260	Right-handed alpha
Helix 25	25	B	1392	1401	Right-handed alpha
Helix 26	26	B	1408	1413	Right-handed alpha
Helix 27	27	B	1507	1512	Right-handed alpha
Helix 28	28	B	1568	1573	Right-handed alpha
Helix 29	29	B	1620	1636	Right-handed alpha

There are 22 sheets in PDB entry 2I07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	82	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	51	54	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	112	first strand
Strand 2	A	122	130	anti-parallel
Strand 3	A	166	172	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	191	202	parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	140	146	anti-parallel
Strand 5	A	152	159	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	277	280	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	254	anti-parallel
Strand 5	A	259	271	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	384	389	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	417	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	367	369	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	437	first strand
Strand 2	A	448	456	anti-parallel
Strand 3	A	492	498	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	517	anti-parallel
Strand 4	A	521	532	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	558	566	anti-parallel
Strand 3	B	764	772	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	A	570	572	anti-parallel
Strand 3	B	785	788	anti-parallel
Strand 4	B	792	795	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	575	577	anti-parallel
Strand 3	B	778	782	anti-parallel
Strand 4	B	799	803	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	878	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	900	910	parallel
Strand 3	B	884	894	anti-parallel
Strand 4	B	838	844	anti-parallel
Strand 5	B	860	866	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	923	first strand
Strand 2	B	1317	1329	anti-parallel
Strand 3	B	955	963	anti-parallel
Strand 4	B	1299	1302	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	937	939	first strand
Strand 2	B	1309	1311	anti-parallel
Strand 3	B	1271	1277	anti-parallel
Strand 4	B	1285	1290	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	937	939	first strand
Strand 2	B	1309	1311	anti-parallel
Strand 3	B	1271	1277	anti-parallel
Strand 4	B	1314	1315	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1339	1347	first strand
Strand 2	B	1362	1370	anti-parallel
Strand 3	B	1435	1443	anti-parallel
Strand 4	B	1389	1391	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1406	first strand
Strand 2	B	1421	1426	anti-parallel
Strand 3	B	1379	1384	anti-parallel
Strand 4	B	1453	1459	anti-parallel
Strand 5	B	1467	1471	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1482	1485	first strand
Strand 2	B	1488	1491	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1589	1592	first strand
Strand 2	B	1595	1599	anti-parallel
Strand 3	B	1559	1565	parallel
Strand 4	B	1536	1548	anti-parallel
Strand 5	B	1521	1531	anti-parallel
Strand 6	B	1579	1584	anti-parallel
Strand 7	B	1605	1609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2I07

Analysis of interatomic Contacts of Structural Units in PDB entry:
2I07