Analysis of interatomic Contacts of Structural Units in PDB entry:
2I34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I34 entry

There are 2 chains in PDB entry 2I34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14ASP 250
B
 VAL 14ASP 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2I34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
20 30Right-handed alpha
Helix 3
3
A
30 55Right-handed alpha
Helix 4
4
A
73 84Right-handed alpha
Helix 5
5
A
90 98Right-handed alpha
Helix 6
6
A
105 116Right-handed alpha
Helix 7
7
A
130 142Right-handed alpha
Helix 8
8
A
161 171Right-handed alpha
Helix 9
9
A
181 185Right-handed 310
Helix 10
10
A
192 203Right-handed alpha
Helix 11
11
A
204 207Right-handed 310
Helix 12
12
A
220 227Right-handed alpha
Helix 13
13
A
234 246Right-handed alpha
Helix 14
14
B
15 19Right-handed 310
Helix 15
15
B
20 30Right-handed alpha
Helix 16
16
B
30 55Right-handed alpha
Helix 17
17
B
73 84Right-handed alpha
Helix 18
18
B
90 98Right-handed alpha
Helix 19
19
B
105 116Right-handed alpha
Helix 20
20
B
130 142Right-handed alpha
Helix 21
21
B
161 171Right-handed alpha
Helix 22
22
B
181 185Right-handed 310
Helix 23
23
B
192 203Right-handed alpha
Helix 24
24
B
204 207Right-handed 310
Helix 25
25
B
220 227Right-handed alpha
Helix 26
26
B
234 245Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2I34. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
119 127parallel
Strand 3
A
59 64parallel
Strand 4
A
172 179parallel
Strand 5
A
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
119 127parallel
Strand 3
B
59 64parallel
Strand 4
B
172 179parallel
Strand 5
B
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
101 102anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il