Analysis of interatomic Contacts of Structural Units in PDB entry:
2I5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I5J entry

There are 2 chains in PDB entry 2I5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1VAL 552
B
 PRO 1LEU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2I5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
77 82Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
155 175Right-handed alpha
Helix 6
6
A
194 212Right-handed alpha
Helix 7
7
A
253 268Right-handed alpha
Helix 8
8
A
276 281Right-handed alpha
Helix 9
9
A
296 311Right-handed alpha
Helix 10
10
A
363 383Right-handed alpha
Helix 11
11
A
394 403Right-handed alpha
Helix 12
12
A
473 489Right-handed alpha
Helix 13
13
A
499 507Right-handed alpha
Helix 14
14
A
515 528Right-handed alpha
Helix 15
15
A
547 552Right-handed alpha
Helix 16
16
B
27 45Right-handed alpha
Helix 17
17
B
77 83Right-handed alpha
Helix 18
18
B
84 89Right-handed alpha
Helix 19
19
B
112 116Right-handed 310
Helix 20
20
B
121 127Right-handed 310
Helix 21
21
B
134 138Right-handed 310
Helix 22
22
B
154 175Right-handed alpha
Helix 23
23
B
197 212Right-handed alpha
Helix 24
24
B
253 266Right-handed alpha
Helix 25
25
B
267 270Right-handed 310
Helix 26
26
B
299 310Right-handed alpha
Helix 27
27
B
363 383Right-handed alpha
Helix 28
28
B
394 406Right-handed alpha
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There are 10 sheets in PDB entry 2I5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
71 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
186 187anti-parallel
Strand 3
A
182 183anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 354first strand
Strand 2
A
337 344anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 470first strand
Strand 2
A
452 459anti-parallel
Strand 3
A
439 447anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
129 132anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
233 234anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 354first strand
Strand 2
B
337 344anti-parallel
Strand 3
B
326 331anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
413 416parallel
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