Analysis of interatomic Contacts of Structural Units in PDB entry:
2I7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I7R entry

There are 2 chains in PDB entry 2I7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 115
B
 MSE 1LYS 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2I7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
70 82Right-handed alpha
Helix 3
3
A
104 106Right-handed 310
Helix 4
4
B
12 25Right-handed alpha
Helix 5
5
B
70 82Right-handed alpha
Helix 6
6
B
104 106Right-handed 310
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There are 2 sheets in PDB entry 2I7R. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
2 9parallel
Strand 5
B
62 67anti-parallel
Strand 6
B
108 113parallel
Strand 7
B
97 102anti-parallel
Strand 8
B
85 91anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
97 102anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
62 67parallel
Strand 5
B
2 9anti-parallel
Strand 6
B
44 48parallel
Strand 7
B
35 39anti-parallel
Strand 8
B
30 32anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il