Analysis of interatomic Contacts of Structural Units in PDB entry:
2I8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I8J entry

There is 1 chain in PDB entry 2I8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 ARG 594LEU 888
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2I8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
598 602Right-handed 310
Helix 2
2
604 613Right-handed alpha
Helix 3
3
617 619Right-handed 310
Helix 4
4
660 675Right-handed alpha
Helix 5
5
706 713Right-handed alpha
Helix 6
6
719 740Right-handed alpha
Helix 7
7
748 750Right-handed 310
Helix 8
8
765 779Right-handed alpha
Helix 9
9
787 791Right-handed 310
Helix 10
10
792 798Right-handed alpha
Helix 11
11
802 819Right-handed alpha
Helix 12
12
829 839Right-handed alpha
Helix 13
13
850 861Right-handed alpha
Helix 14
14
870 884Right-handed alpha
Helix 15
15
885 888Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2I8J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

621 629first strand
Strand 2

634 640anti-parallel
Strand 3

648 654anti-parallel
Strand 4

696 700anti-parallel
Strand 5

685 689anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

752 754first strand
Strand 2

760 762anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il