Analysis of interatomic Contacts of Structural Units in PDB entry:
2I8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I8M entry

There is 1 chain in PDB entry 2I8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 LEU 509TRP 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2I8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
543 560Right-handed alpha
Helix 2
2
595 601Right-handed alpha
Helix 3
3
614 634Right-handed alpha
Helix 4
4
642 644Right-handed 310
Helix 5
5
659 663Right-handed 310
Helix 6
6
680 684Right-handed 310
Helix 7
7
685 692Right-handed alpha
Helix 8
8
695 712Right-handed alpha
Helix 9
9
722 724Right-handed 310
Helix 10
10
725 732Right-handed alpha
Helix 11
11
743 754Right-handed alpha
Helix 12
12
757 761Right-handed 310
Helix 13
13
763 775Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2I8M. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

517 523first strand
Strand 2

529 536anti-parallel
Strand 3

584 589anti-parallel
Strand 4

570 573anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

646 648first strand
Strand 2

654 656anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il