Analysis of interatomic Contacts of Structural Units in PDB entry:
2IFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IFT entry

There are 2 chains in PDB entry 2IFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLU 195
B
 PRO 35GLU 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2IFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 53Right-handed alpha
Helix 2
2
A
65 74Right-handed alpha
Helix 3
3
A
85 99Right-handed alpha
Helix 4
4
A
112 117Right-handed alpha
Helix 5
5
A
138 150Right-handed alpha
Helix 6
6
B
37 49Right-handed alpha
Helix 7
7
B
51 54Right-handed 310
Helix 8
8
B
65 74Right-handed alpha
Helix 9
9
B
85 97Right-handed alpha
Helix 10
10
B
112 117Right-handed alpha
Helix 11
11
B
138 150Right-handed alpha
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There are 3 sheets in PDB entry 2IFT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
24 26anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
78 82parallel
Strand 3
A
56 59parallel
Strand 4
A
126 131parallel
Strand 5
A
153 164parallel
Strand 6
A
186 193anti-parallel
Strand 7
A
175 183anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
78 82parallel
Strand 3
B
56 59parallel
Strand 4
B
126 131parallel
Strand 5
B
153 164parallel
Strand 6
B
186 193anti-parallel
Strand 7
B
175 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il