Analysis of interatomic Contacts of Structural Units in PDB entry:
2IGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IGI entry

There are 2 chains in PDB entry 2IGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 180
B
 ALA 2LEU 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2IGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
58 68Right-handed alpha
Helix 4
4
A
69 77Right-handed alpha
Helix 5
5
A
80 93Right-handed alpha
Helix 6
6
A
107 119Right-handed alpha
Helix 7
7
A
119 126Right-handed alpha
Helix 8
8
A
133 144Right-handed alpha
Helix 9
9
A
145 151Right-handed 310
Helix 10
10
A
158 177Right-handed alpha
Helix 11
11
B
50 55Right-handed alpha
Helix 12
12
B
58 68Right-handed alpha
Helix 13
13
B
69 77Right-handed alpha
Helix 14
14
B
80 93Right-handed alpha
Helix 15
15
B
107 119Right-handed alpha
Helix 16
16
B
119 126Right-handed alpha
Helix 17
17
B
133 144Right-handed alpha
Helix 18
18
B
145 151Right-handed 310
Helix 19
19
B
158 177Right-handed alpha
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There are 2 sheets in PDB entry 2IGI. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
24 32anti-parallel
Strand 3
A
7 14anti-parallel
Strand 4
A
103 105parallel
Strand 5
A
130 132parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
24 32anti-parallel
Strand 3
B
7 14anti-parallel
Strand 4
B
103 105parallel
Strand 5
B
130 132parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il