Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IJ0 entry

There are 4 chains in PDB entry 2IJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ASN 194
E
 GLY 1LEU 117
B
 SER 1ASN 194
C
 GLY 1LEU 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2IJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
125 141Right-handed alpha
Helix 3
3
A
173 177Right-handed 310
Helix 4
4
E
83 87Right-handed 310
Helix 5
5
B
8 14Right-handed alpha
Helix 6
6
B
125 141Right-handed alpha
Helix 7
7
B
173 177Right-handed 310
Helix 8
8
C
83 87Right-handed 310
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There are 12 sheets in PDB entry 2IJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
61 70anti-parallel
Strand 3
A
82 85anti-parallel
Strand 4
A
42 46parallel
Strand 5
A
32 36anti-parallel
Strand 6
A
18 28anti-parallel
Strand 7
A
61 70anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
119 121anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
186 192parallel
Strand 3
A
153 158anti-parallel
Strand 4
A
163 167anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
181 182anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
74 79anti-parallel
Strand 4
E
65 68anti-parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 56first strand
Strand 2
E
43 50anti-parallel
Strand 3
E
31 37anti-parallel
Strand 4
E
88 95anti-parallel
Strand 5
E
112 116anti-parallel
Strand 6
E
10 13parallel
Strand 7
C
10 14anti-parallel
Strand 8
C
112 117parallel
Strand 9
C
88 95anti-parallel
Strand 10
C
31 37anti-parallel
Strand 11
C
43 50anti-parallel
Strand 12
C
55 56anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
106 108first strand
Strand 2
E
88 95anti-parallel
Strand 3
E
112 116anti-parallel
Strand 4
E
10 13parallel
Strand 5
C
10 14anti-parallel
Strand 6
C
112 117parallel
Strand 7
C
88 95anti-parallel
Strand 8
C
107 108anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
61 74anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
41 46parallel
Strand 5
B
32 36anti-parallel
Strand 6
B
18 28anti-parallel
Strand 7
B
61 74anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
119 121anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
186 193parallel
Strand 4
B
153 158anti-parallel
Strand 5
B
163 167anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
181 182anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
74 79anti-parallel
Strand 4
C
65 69anti-parallel
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