Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2IJ5 entry

There are 4 chains in PDB entry 2IJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	TRP 396
B	THR 4	TRP 396
C	ALA 3	TRP 396
D	LEU 6	VAL 149

There are124 helices in PDB entry 2IJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	20	29	Right-handed alpha
Helix 2	2	A	47	57	Right-handed alpha
Helix 3	3	A	62	67	Right-handed 310
Helix 4	4	A	79	83	Right-handed 310
Helix 5	5	A	84	92	Right-handed alpha
Helix 6	6	A	94	102	Right-handed alpha
Helix 7	7	A	108	128	Right-handed alpha
Helix 8	8	A	137	151	Right-handed alpha
Helix 9	9	A	153	155	Right-handed 310
Helix 10	10	A	156	163	Right-handed alpha
Helix 11	11	A	163	168	Right-handed alpha
Helix 12	12	A	175	194	Right-handed alpha
Helix 13	13	A	200	212	Right-handed alpha
Helix 14	14	A	213	216	Right-handed 310
Helix 15	15	A	219	251	Right-handed alpha
Helix 16	16	A	252	262	Right-handed alpha
Helix 17	17	A	265	276	Right-handed alpha
Helix 18	18	A	308	314	Right-handed alpha
Helix 19	19	A	340	344	Right-handed 310
Helix 20	20	A	347	366	Right-handed alpha
Helix 21	21	A	374	378	Right-handed 310
Helix 22	22	B	20	29	Right-handed alpha
Helix 23	23	B	47	57	Right-handed alpha
Helix 24	24	B	62	67	Right-handed 310
Helix 25	25	B	79	83	Right-handed 310
Helix 26	26	B	84	92	Right-handed alpha
Helix 27	27	B	94	102	Right-handed alpha
Helix 28	28	B	108	128	Right-handed alpha
Helix 29	29	B	137	151	Right-handed alpha
Helix 30	30	B	153	155	Right-handed 310
Helix 31	31	B	156	163	Right-handed alpha
Helix 32	32	B	163	168	Right-handed alpha
Helix 33	33	B	175	195	Right-handed alpha
Helix 34	34	B	200	210	Right-handed alpha
Helix 35	35	B	214	218	Right-handed 310
Helix 36	36	B	219	251	Right-handed alpha
Helix 37	37	B	252	262	Right-handed alpha
Helix 38	38	B	265	276	Right-handed alpha
Helix 39	39	B	308	314	Right-handed alpha
Helix 40	40	B	340	344	Right-handed 310
Helix 41	41	B	347	366	Right-handed alpha
Helix 42	42	B	374	378	Right-handed 310
Helix 43	43	C	19	29	Right-handed alpha
Helix 44	44	C	47	57	Right-handed alpha
Helix 45	45	C	62	67	Right-handed 310
Helix 46	46	C	79	83	Right-handed 310
Helix 47	47	C	84	92	Right-handed alpha
Helix 48	48	C	94	103	Right-handed alpha
Helix 49	49	C	108	128	Right-handed alpha
Helix 50	50	C	137	151	Right-handed alpha
Helix 51	51	C	153	155	Right-handed 310
Helix 52	52	C	156	163	Right-handed alpha
Helix 53	53	C	163	168	Right-handed alpha
Helix 54	54	C	175	194	Right-handed alpha
Helix 55	55	C	200	211	Right-handed alpha
Helix 56	56	C	212	216	Right-handed 310
Helix 57	57	C	219	251	Right-handed alpha
Helix 58	58	C	252	262	Right-handed alpha
Helix 59	59	C	265	276	Right-handed alpha
Helix 60	60	C	308	314	Right-handed alpha
Helix 61	61	C	340	344	Right-handed 310
Helix 62	62	C	347	366	Right-handed alpha
Helix 63	63	C	374	378	Right-handed 310
Helix 64	64	D	20	29	Right-handed alpha
Helix 65	65	D	47	57	Right-handed alpha
Helix 66	66	D	62	67	Right-handed 310
Helix 67	67	D	79	83	Right-handed 310
Helix 68	68	D	84	92	Right-handed alpha
Helix 69	69	D	94	102	Right-handed alpha
Helix 70	70	D	108	128	Right-handed alpha
Helix 71	71	D	137	151	Right-handed alpha
Helix 72	72	D	153	155	Right-handed 310
Helix 73	73	D	156	163	Right-handed alpha
Helix 74	74	D	163	168	Right-handed alpha
Helix 75	75	D	175	195	Right-handed alpha
Helix 76	76	D	200	211	Right-handed alpha
Helix 77	77	D	212	216	Right-handed 310
Helix 78	78	D	219	251	Right-handed alpha
Helix 79	79	D	252	262	Right-handed alpha
Helix 80	80	D	265	276	Right-handed alpha
Helix 81	81	D	308	314	Right-handed alpha
Helix 82	82	D	340	344	Right-handed 310
Helix 83	83	D	347	366	Right-handed alpha
Helix 84	84	D	374	378	Right-handed 310
Helix 85	85	E	20	29	Right-handed alpha
Helix 86	86	E	47	57	Right-handed alpha
Helix 87	87	E	62	67	Right-handed 310
Helix 88	88	E	79	83	Right-handed 310
Helix 89	89	E	91	102	Right-handed alpha
Helix 90	90	E	109	128	Right-handed alpha
Helix 91	91	E	137	151	Right-handed alpha
Helix 92	92	E	153	155	Right-handed 310
Helix 93	93	E	156	163	Right-handed alpha
Helix 94	94	E	163	168	Right-handed alpha
Helix 95	95	E	175	195	Right-handed alpha
Helix 96	96	E	200	210	Right-handed alpha
Helix 97	97	E	211	216	Right-handed 310
Helix 98	98	E	219	251	Right-handed alpha
Helix 99	99	E	252	262	Right-handed alpha
Helix 100	100	E	265	276	Right-handed alpha
Helix 101	101	E	308	314	Right-handed alpha
Helix 102	102	E	340	344	Right-handed 310
Helix 103	103	E	347	366	Right-handed alpha
Helix 104	104	E	374	378	Right-handed 310
Helix 105	105	F	20	29	Right-handed alpha
Helix 106	106	F	47	57	Right-handed alpha
Helix 107	107	F	62	67	Right-handed 310
Helix 108	108	F	79	83	Right-handed 310
Helix 109	109	F	84	92	Right-handed alpha
Helix 110	110	F	94	102	Right-handed alpha
Helix 111	111	F	109	128	Right-handed alpha
Helix 112	112	F	137	151	Right-handed alpha
Helix 113	113	F	153	155	Right-handed 310
Helix 114	114	F	156	163	Right-handed alpha
Helix 115	115	F	163	168	Right-handed alpha
Helix 116	116	F	175	194	Right-handed alpha
Helix 117	117	F	200	210	Right-handed alpha
Helix 118	118	F	219	251	Right-handed alpha
Helix 119	119	F	252	262	Right-handed alpha
Helix 120	120	F	265	276	Right-handed alpha
Helix 121	121	F	308	314	Right-handed alpha
Helix 122	122	F	340	344	Right-handed 310
Helix 123	123	F	347	366	Right-handed alpha
Helix 124	124	F	374	378	Right-handed 310

There are 18 sheets in PDB entry 2IJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	31	35	parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	304	307	parallel
Strand 5	A	284	288	anti-parallel
Strand 6	A	60	61	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	393	395	anti-parallel
Strand 3	A	370	371	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	297	299	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	304	307	parallel
Strand 4	B	284	288	anti-parallel
Strand 5	B	60	61	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	393	395	anti-parallel
Strand 3	B	370	371	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	297	299	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	35	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	304	307	parallel
Strand 4	C	284	288	anti-parallel
Strand 5	C	60	61	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	393	395	anti-parallel
Strand 3	C	370	371	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	297	299	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	31	35	parallel
Strand 3	D	41	45	anti-parallel
Strand 4	D	304	307	parallel
Strand 5	D	284	288	anti-parallel
Strand 6	D	60	61	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	393	395	anti-parallel
Strand 3	D	370	371	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	297	299	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	31	35	parallel
Strand 3	E	41	45	anti-parallel
Strand 4	E	304	307	parallel
Strand 5	E	284	288	anti-parallel
Strand 6	E	60	61	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	393	395	anti-parallel
Strand 3	E	370	371	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	297	299	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	35	first strand
Strand 2	F	41	45	anti-parallel
Strand 3	F	304	307	parallel
Strand 4	F	284	288	anti-parallel
Strand 5	F	60	61	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	393	395	anti-parallel
Strand 3	F	370	371	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	297	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2IJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJ5