Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IJ9 entry

There are 2 chains in PDB entry 2IJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 219
B
 MET 1ALA 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2IJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
58 81Right-handed alpha
Helix 4
4
A
91 100Right-handed alpha
Helix 5
5
A
116 127Right-handed alpha
Helix 6
6
A
159 167Right-handed alpha
Helix 7
7
A
181 192Right-handed alpha
Helix 8
8
A
201 210Right-handed alpha
Helix 9
9
B
15 33Right-handed alpha
Helix 10
10
B
41 55Right-handed alpha
Helix 11
11
B
58 81Right-handed alpha
Helix 12
12
B
91 100Right-handed alpha
Helix 13
13
B
116 127Right-handed alpha
Helix 14
14
B
159 167Right-handed alpha
Helix 15
15
B
181 192Right-handed alpha
Helix 16
16
B
201 210Right-handed alpha
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There are 2 sheets in PDB entry 2IJ9. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
34 39parallel
Strand 3
A
2 7parallel
Strand 4
A
131 136parallel
Strand 5
A
195 199parallel
Strand 6
A
216 218anti-parallel
Strand 7
A
157 158parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
34 39parallel
Strand 3
B
2 7parallel
Strand 4
B
131 136parallel
Strand 5
B
195 199parallel
Strand 6
B
216 218anti-parallel
Strand 7
B
157 158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il