Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IJD entry

There are 2 chains in PDB entry 2IJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLY 1PHE 644
2
 GLY 1PHE 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2IJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
1 14Right-handed alpha
Helix 2
2
1
40 42Right-handed 310
Helix 3
3
1
86 90Right-handed 310
Helix 4
4
1
175 179Right-handed 310
Helix 5
5
1
193 196Right-handed 310
Helix 6
6
1
236 243Right-handed alpha
Helix 7
7
1
254 269Right-handed alpha
Helix 8
8
1
270 272Right-handed 310
Helix 9
9
1
279 286Right-handed alpha
Helix 10
10
1
321 332Right-handed alpha
Helix 11
11
1
347 353Right-handed alpha
Helix 12
12
1
363 383Right-handed alpha
Helix 13
13
1
396 408Right-handed alpha
Helix 14
14
1
419 424Right-handed alpha
Helix 15
15
1
425 439Right-handed alpha
Helix 16
16
1
440 444Right-handed 310
Helix 17
17
1
445 452Right-handed alpha
Helix 18
18
1
475 496Right-handed alpha
Helix 19
19
1
500 504Right-handed 310
Helix 20
20
1
522 533Right-handed alpha
Helix 21
21
1
576 585Right-handed alpha
Helix 22
22
1
592 605Right-handed alpha
Helix 23
23
1
608 620Right-handed alpha
Helix 24
24
1
622 627Right-handed alpha
Helix 25
25
1
632 644Right-handed alpha
Helix 26
26
2
1 14Right-handed alpha
Helix 27
27
2
40 42Right-handed 310
Helix 28
28
2
86 90Right-handed 310
Helix 29
29
2
175 179Right-handed 310
Helix 30
30
2
193 196Right-handed 310
Helix 31
31
2
236 243Right-handed alpha
Helix 32
32
2
254 269Right-handed alpha
Helix 33
33
2
270 272Right-handed 310
Helix 34
34
2
279 286Right-handed alpha
Helix 35
35
2
302 306Right-handed 310
Helix 36
36
2
309 313Right-handed 310
Helix 37
37
2
321 332Right-handed alpha
Helix 38
38
2
347 353Right-handed alpha
Helix 39
39
2
363 383Right-handed alpha
Helix 40
40
2
396 401Right-handed alpha
Helix 41
41
2
403 408Right-handed alpha
Helix 42
42
2
420 424Right-handed 310
Helix 43
43
2
425 439Right-handed alpha
Helix 44
44
2
441 444Right-handed 310
Helix 45
45
2
445 452Right-handed alpha
Helix 46
46
2
475 496Right-handed alpha
Helix 47
47
2
500 504Right-handed 310
Helix 48
48
2
522 532Right-handed alpha
Helix 49
49
2
576 584Right-handed alpha
Helix 50
50
2
589 591Right-handed 310
Helix 51
51
2
592 605Right-handed alpha
Helix 52
52
2
608 620Right-handed alpha
Helix 53
53
2
622 627Right-handed alpha
Helix 54
54
2
632 642Right-handed alpha
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There are 17 sheets in PDB entry 2IJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
61 63first strand
Strand 2
1
69 77anti-parallel
Strand 3
1
52 58anti-parallel
Strand 4
1
46 49anti-parallel
Strand 5
1
15 20anti-parallel
Strand 6
1
23 31anti-parallel
Strand 7
1
34 38anti-parallel
Strand 8
1
69 77anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
97 104first strand
Strand 2
1
112 125anti-parallel
Strand 3
1
132 138anti-parallel
Strand 4
1
169 173anti-parallel
Strand 5
1
156 164anti-parallel
Strand 6
1
150 153anti-parallel
Strand 7
1
97 104anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
188 191first strand
Strand 2
1
461 466anti-parallel
Strand 3
1
453 457anti-parallel
Strand 4
1
337 341parallel
Strand 5
1
358 361anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
209 210first strand
Strand 2
1
586 587anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
222 223first strand
Strand 2
1
345 346anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
411 413first strand
Strand 2
1
512 517anti-parallel
Strand 3
1
505 509anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
415 417first strand
Strand 2
1
537 539anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
560 563first strand
Strand 2
1
571 574anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 20first strand
Strand 2
2
23 31anti-parallel
Strand 3
2
34 38anti-parallel
Strand 4
2
69 77anti-parallel
Strand 5
2
52 63anti-parallel
Strand 6
2
46 49anti-parallel
Strand 7
2
15 20anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
97 104first strand
Strand 2
2
112 122anti-parallel
Strand 3
2
135 138anti-parallel
Strand 4
2
169 173anti-parallel
Strand 5
2
156 164anti-parallel
Strand 6
2
150 153anti-parallel
Strand 7
2
97 104anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
125 126first strand
Strand 2
2
131 132anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
188 191first strand
Strand 2
2
461 466anti-parallel
Strand 3
2
453 457anti-parallel
Strand 4
2
337 341parallel
Strand 5
2
358 361anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
209 210first strand
Strand 2
2
586 587anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
222 223first strand
Strand 2
2
345 346anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
411 413first strand
Strand 2
2
512 517anti-parallel
Strand 3
2
505 509anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
415 417first strand
Strand 2
2
537 539anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
560 563first strand
Strand 2
2
571 574anti-parallel
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