Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IJR entry

There is 1 chain in PDB entry 2IJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2IJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
31 50Right-handed alpha
Helix 3
3
A
63 68Right-handed 310
Helix 4
4
A
75 90Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
110 114Right-handed 310
Helix 7
7
A
121 134Right-handed alpha
Helix 8
8
A
134 139Right-handed alpha
Helix 9
9
A
149 157Right-handed alpha
Helix 10
10
A
168 172Right-handed 310
Helix 11
11
A
176 183Right-handed alpha
Helix 12
12
A
193 203Right-handed alpha
Helix 13
13
A
234 245Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2IJR.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 218first strand
Strand 2
A
221 229anti-parallel
Strand 3
A
4 12anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
270 274anti-parallel
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