Analysis of interatomic Contacts of Structural Units in PDB entry:
2IJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IJS entry

There is 1 chain in PDB entry 2IJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 SER 1THR 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 2IJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
12 23Right-handed alpha
Helix 2
2
55 60Right-handed alpha
Helix 3
3
132 136Right-handed alpha
Helix 4
4
172 181Right-handed alpha
Helix 5
5
212 221Right-handed alpha
Helix 6
6
231 247Right-handed alpha
Helix 7
7
270 277Right-handed alpha
Helix 8
8
296 310Right-handed alpha
Helix 9
9
355 359Right-handed 310
Helix 10
10
370 384Right-handed alpha
Helix 11
11
413 418Right-handed alpha
Helix 12
12
454 463Right-handed alpha
Helix 13
13
487 501Right-handed alpha
Helix 14
14
505 519Right-handed alpha
Helix 15
15
528 539Right-handed alpha
Helix 16
16
543 554Right-handed alpha
Helix 17
17
557 570Right-handed alpha
Helix 18
18
579 592Right-handed 310
Helix 19
19
613 623Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2IJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

33 37first strand
Strand 2

42 48anti-parallel
Strand 3

51 54anti-parallel
Strand 4

82 86anti-parallel
Strand 5

75 77anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

627 630first strand
Strand 2

150 160anti-parallel
Strand 3

163 171anti-parallel
Strand 4

123 131anti-parallel
Strand 5

113 118anti-parallel
Strand 6

103 107anti-parallel
Strand 7

142 144anti-parallel
Strand 8

150 160anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

198 203first strand
Strand 2

317 322parallel
Strand 3

286 290parallel
Strand 4

225 229parallel
Strand 5

265 269parallel
Strand 6

251 253parallel
Strand 7

258 259anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

336 340first strand
Strand 2

471 475parallel
Strand 3

424 427parallel
Strand 4

363 367parallel
Strand 5

406 410parallel
Strand 6

388 391parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

347 349first strand
Strand 2

352 354anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

430 437first strand
Strand 2

445 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

596 597first strand
Strand 2

609 610parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il