Analysis of interatomic Contacts of Structural Units in PDB entry:
2IK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IK0 entry

There are 2 chains in PDB entry 2IK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1SER 283
B
 THR 1VAL 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2IK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 40Right-handed 310
Helix 2
2
A
164 168Right-handed 310
Helix 3
3
A
170 178Right-handed alpha
Helix 4
4
A
180 192Right-handed alpha
Helix 5
5
A
193 197Right-handed 310
Helix 6
6
A
205 208Right-handed 310
Helix 7
7
A
211 231Right-handed alpha
Helix 8
8
A
255 261Right-handed alpha
Helix 9
9
A
273 277Right-handed 310
Helix 10
10
B
164 168Right-handed 310
Helix 11
11
B
170 178Right-handed alpha
Helix 12
12
B
180 192Right-handed alpha
Helix 13
13
B
193 197Right-handed 310
Helix 14
14
B
205 207Right-handed 310
Helix 15
15
B
211 231Right-handed alpha
Helix 16
16
B
254 261Right-handed 310
Helix 17
17
B
273 277Right-handed 310
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There are 14 sheets in PDB entry 2IK0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
24 26anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
92 95anti-parallel
Strand 4
A
120 123anti-parallel
Strand 5
A
151 159parallel
Strand 6
A
134 146anti-parallel
Strand 7
A
202 203anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
134 146anti-parallel
Strand 4
A
202 203anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
68 70anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
279 280parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
2 9anti-parallel
Strand 4
B
265 267parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
92 95anti-parallel
Strand 4
B
120 123anti-parallel
Strand 5
B
150 159parallel
Strand 6
B
134 147anti-parallel
Strand 7
B
209 210anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
92 95anti-parallel
Strand 4
B
120 123anti-parallel
Strand 5
B
150 159parallel
Strand 6
B
134 147anti-parallel
Strand 7
B
202 203anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
134 147anti-parallel
Strand 4
B
209 210anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
134 147anti-parallel
Strand 4
B
202 203anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
68 70anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
76 77anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
279 280parallel
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