Analysis of interatomic Contacts of Structural Units in PDB entry:
2ILP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ILP entry

There are 2 chains in PDB entry 2ILP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -9PHE 419
B
 SER -9LYS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2ILP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 100Right-handed alpha
Helix 2
2
A
101 114Right-handed alpha
Helix 3
3
A
130 132Right-handed 310
Helix 4
4
A
216 233Right-handed alpha
Helix 5
5
A
260 267Right-handed alpha
Helix 6
6
A
267 272Right-handed alpha
Helix 7
7
A
275 300Right-handed alpha
Helix 8
8
A
309 322Right-handed alpha
Helix 9
9
A
334 347Right-handed alpha
Helix 10
10
A
350 359Right-handed alpha
Helix 11
11
A
395 399Right-handed 310
Helix 12
12
A
401 405Right-handed 310
Helix 13
13
A
409 413Right-handed 310
Helix 14
14
B
80 100Right-handed alpha
Helix 15
15
B
101 114Right-handed alpha
Helix 16
16
B
130 132Right-handed 310
Helix 17
17
B
205 209Right-handed 310
Helix 18
18
B
216 233Right-handed alpha
Helix 19
19
B
260 267Right-handed alpha
Helix 20
20
B
268 274Right-handed 310
Helix 21
21
B
275 300Right-handed alpha
Helix 22
22
B
309 322Right-handed alpha
Helix 23
23
B
334 347Right-handed alpha
Helix 24
24
B
350 359Right-handed alpha
Helix 25
25
B
401 405Right-handed 310
Helix 26
26
B
409 413Right-handed 310
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There are 10 sheets in PDB entry 2ILP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
151 155parallel
Strand 7
A
184 187parallel
Strand 8
A
164 167anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
302 303parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
192 199anti-parallel
Strand 3
A
373 375anti-parallel
Strand 4
A
414 415anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
258 259anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
134 138anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
42 48anti-parallel
Strand 6
B
151 155parallel
Strand 7
B
184 187parallel
Strand 8
B
164 167anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
302 303parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
373 375anti-parallel
Strand 4
B
414 416anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
258 259anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il