Analysis of interatomic Contacts of Structural Units in PDB entry:
2IMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IMD entry

There is 1 chain in PDB entry 2IMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2IMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
38 47Right-handed alpha
Helix 3
3
A
52 55Right-handed 310
Helix 4
4
A
56 75Right-handed alpha
Helix 5
5
A
86 93Right-handed alpha
Helix 6
6
A
94 96Right-handed 310
Helix 7
7
A
98 116Right-handed alpha
Helix 8
8
A
124 134Right-handed alpha
Helix 9
9
A
136 146Right-handed alpha
Helix 10
10
A
146 163Right-handed alpha
Helix 11
11
A
183 199Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2IMD.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
2 7parallel
Strand 3
A
170 173anti-parallel
Strand 4
A
176 179anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il