Analysis of interatomic Contacts of Structural Units in PDB entry:
2IN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IN5 entry

There are 2 chains in PDB entry 2IN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3LEU 200
B
 HIS 3ALA 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2IN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 19Right-handed alpha
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
91 103Right-handed 310
Helix 4
4
B
7 17Right-handed alpha
Helix 5
5
B
91 103Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 2IN5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
58 62anti-parallel
Strand 4
A
47 55anti-parallel
Strand 5
A
36 41anti-parallel
Strand 6
A
189 194anti-parallel
Strand 7
A
176 182anti-parallel
Strand 8
A
161 170anti-parallel
Strand 9
A
143 156anti-parallel
Strand 10
A
120 140anti-parallel
Strand 11
A
108 117anti-parallel
Strand 12
A
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 80first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
46 55anti-parallel
Strand 5
B
36 41anti-parallel
Strand 6
B
189 195anti-parallel
Strand 7
B
176 182anti-parallel
Strand 8
B
161 170anti-parallel
Strand 9
B
143 156anti-parallel
Strand 10
B
120 132anti-parallel
Strand 11
B
108 117anti-parallel
Strand 12
B
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 80first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
46 55anti-parallel
Strand 5
B
36 41anti-parallel
Strand 6
B
189 195anti-parallel
Strand 7
B
176 182anti-parallel
Strand 8
B
161 170anti-parallel
Strand 9
B
143 156anti-parallel
Strand 10
B
136 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il