Analysis of interatomic Contacts of Structural Units in PDB entry:
2IND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IND entry

There are 3 chains in PDB entry 2IND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 492
B
 ALA 8LEU 330
C
 THR 3ASP 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 2IND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
30 35Right-handed alpha
Helix 4
4
A
40 45Right-handed alpha
Helix 5
5
A
54 77Right-handed alpha
Helix 6
6
A
78 84Right-handed 310
Helix 7
7
A
86 118Right-handed alpha
Helix 8
8
A
120 144Right-handed alpha
Helix 9
9
A
145 149Right-handed 310
Helix 10
10
A
152 155Right-handed 310
Helix 11
11
A
156 161Right-handed alpha
Helix 12
12
A
162 164Right-handed 310
Helix 13
13
A
166 180Right-handed alpha
Helix 14
14
A
184 192Right-handed alpha
Helix 15
15
A
200 216Right-handed alpha
Helix 16
16
A
217 235Right-handed alpha
Helix 17
17
A
237 247Right-handed alpha
Helix 18
18
A
250 273Right-handed alpha
Helix 19
19
A
273 280Right-handed alpha
Helix 20
20
A
282 286Right-handed 310
Helix 21
21
A
289 298Right-handed alpha
Helix 22
22
A
298 309Right-handed alpha
Helix 23
23
A
316 324Right-handed alpha
Helix 24
24
A
326 338Right-handed alpha
Helix 25
25
A
339 342Right-handed 310
Helix 26
26
A
351 362Right-handed alpha
Helix 27
27
A
368 382Right-handed alpha
Helix 28
28
A
384 388Right-handed 310
Helix 29
29
A
430 439Right-handed alpha
Helix 30
30
A
440 444Right-handed 310
Helix 31
31
A
449 456Right-handed alpha
Helix 32
32
A
463 471Right-handed alpha
Helix 33
33
A
485 489Right-handed 310
Helix 34
34
B
15 19Right-handed 310
Helix 35
35
B
26 33Right-handed alpha
Helix 36
36
B
52 62Right-handed alpha
Helix 37
37
B
71 75Right-handed 310
Helix 38
38
B
82 107Right-handed alpha
Helix 39
39
B
114 125Right-handed alpha
Helix 40
40
B
127 146Right-handed alpha
Helix 41
41
B
148 180Right-handed alpha
Helix 42
42
B
188 196Right-handed alpha
Helix 43
43
B
196 210Right-handed alpha
Helix 44
44
B
214 224Right-handed alpha
Helix 45
45
B
225 235Right-handed alpha
Helix 46
46
B
235 245Right-handed alpha
Helix 47
47
B
247 276Right-handed alpha
Helix 48
48
B
280 305Right-handed alpha
Helix 49
49
B
309 327Right-handed alpha
Helix 50
50
C
26 36Right-handed alpha
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There are 2 sheets in PDB entry 2IND. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
424 426anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
4 10anti-parallel
Strand 3
C
78 84parallel
Strand 4
C
50 55anti-parallel
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