Analysis of interatomic Contacts of Structural Units in PDB entry:
2INY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2INY entry

There is 1 chain in PDB entry 2INY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1VAL 941
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2INY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
29 39Right-handed alpha
Helix 3
3
A
293 297Right-handed 310
Helix 4
4
A
304 308Right-handed 310
Helix 5
5
A
329 341Right-handed alpha
Helix 6
6
A
358 363Right-handed alpha
Helix 7
7
A
429 443Right-handed alpha
Helix 8
8
A
444 447Right-handed 310
Helix 9
9
A
448 452Right-handed 310
Helix 10
10
A
469 474Right-handed alpha
Helix 11
11
A
479 483Right-handed 310
Helix 12
12
A
495 499Right-handed 310
Helix 13
13
A
509 516Right-handed alpha
Helix 14
14
A
592 604Right-handed alpha
Helix 15
15
A
674 678Right-handed 310
Helix 16
16
A
756 760Right-handed 310
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There are 10 sheets in PDB entry 2INY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
583 587anti-parallel
Strand 3
A
105 107anti-parallel
Strand 4
A
529 531anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
550 555anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
251 256parallel
Strand 3
A
234 238anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
563 564anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
408 409anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
476 477anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 621first strand
Strand 2
A
908 911anti-parallel
Strand 3
A
646 649anti-parallel
Strand 4
A
862 864anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 639first strand
Strand 2
A
889 896anti-parallel
Strand 3
A
689 694anti-parallel
Strand 4
A
698 699anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 639first strand
Strand 2
A
889 896anti-parallel
Strand 3
A
689 694anti-parallel
Strand 4
A
712 713anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 771first strand
Strand 2
A
854 856anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il