Analysis of interatomic Contacts of Structural Units in PDB entry:
2IP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IP8 entry

There is 1 chain in PDB entry 2IP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 MET 1TYR 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2IP8. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
190 214Right-handed alpha
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There are 4 sheets in PDB entry 2IP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

7 8first strand
Strand 2

34 36parallel
Strand 3

54 56parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

22 23first strand
Strand 2

41 43parallel
Strand 3

62 64parallel
Strand 4

103 105parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

48 49first strand
Strand 2

69 70parallel
Strand 3

109 111parallel
Strand 4

139 141parallel
Strand 5

158 159parallel
Strand 6

176 179parallel
Strand 7

184 188anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

116 117first strand
Strand 2

146 147parallel
Strand 3

164 165parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il