Analysis of interatomic Contacts of Structural Units in PDB entry:
2IPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IPD entry

There is 1 chain in PDB entry 2IPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue

 MET 1LYS 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2IPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
28 38Right-handed alpha
Helix 2
2
50 59Right-handed alpha
Helix 3
3
61 66Right-handed alpha
Helix 4
4
90 98Right-handed alpha
Helix 5
5
144 150Right-handed alpha
Helix 6
6
171 182Right-handed alpha
Helix 7
7
205 210Right-handed alpha
Helix 8
8
215 231Right-handed alpha
Helix 9
9
253 275Right-handed alpha
Helix 10
10
306 315Right-handed alpha
Helix 11
11
332 341Right-handed alpha
Helix 12
12
373 384Right-handed alpha
Helix 13
13
405 410Right-handed alpha
Helix 14
14
459 473Right-handed alpha
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There are 3 sheets in PDB entry 2IPD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

101 103first strand
Strand 2

189 194parallel
Strand 3

7 12parallel
Strand 4

287 290parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

40 41first strand
Strand 2

365 366parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

123 125first strand
Strand 2

154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il