Analysis of interatomic Contacts of Structural Units in PDB entry:
2IXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IXF entry

There are 4 chains in PDB entry 2IXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 465ALA 719
B
 SER 465ALA 719
C
 GLY 469LEU 720
D
 SER 468ALA 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 2IXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
520 529Right-handed alpha
Helix 2
2
A
550 557Right-handed alpha
Helix 3
3
A
571 578Right-handed alpha
Helix 4
4
A
585 596Right-handed alpha
Helix 5
5
A
598 604Right-handed alpha
Helix 6
6
A
607 611Right-handed 310
Helix 7
7
A
614 618Right-handed 310
Helix 8
8
A
621 636Right-handed alpha
Helix 9
9
A
651 665Right-handed alpha
Helix 10
10
A
679 684Right-handed alpha
Helix 11
11
A
702 710Right-handed alpha
Helix 12
12
A
711 719Right-handed alpha
Helix 13
13
B
520 529Right-handed alpha
Helix 14
14
B
550 557Right-handed alpha
Helix 15
15
B
571 578Right-handed alpha
Helix 16
16
B
585 597Right-handed alpha
Helix 17
17
B
598 604Right-handed alpha
Helix 18
18
B
607 611Right-handed 310
Helix 19
19
B
614 618Right-handed 310
Helix 20
20
B
621 636Right-handed alpha
Helix 21
21
B
651 665Right-handed alpha
Helix 22
22
B
665 670Right-handed alpha
Helix 23
23
B
679 686Right-handed alpha
Helix 24
24
B
702 710Right-handed alpha
Helix 25
25
B
711 719Right-handed alpha
Helix 26
26
C
520 529Right-handed alpha
Helix 27
27
C
550 557Right-handed alpha
Helix 28
28
C
571 578Right-handed alpha
Helix 29
29
C
585 596Right-handed alpha
Helix 30
30
C
598 603Right-handed alpha
Helix 31
31
C
607 611Right-handed 310
Helix 32
32
C
621 636Right-handed alpha
Helix 33
33
C
651 665Right-handed alpha
Helix 34
34
C
679 686Right-handed alpha
Helix 35
35
C
702 710Right-handed alpha
Helix 36
36
C
711 720Right-handed alpha
Helix 37
37
D
520 529Right-handed alpha
Helix 38
38
D
550 557Right-handed alpha
Helix 39
39
D
571 578Right-handed alpha
Helix 40
40
D
585 596Right-handed alpha
Helix 41
41
D
598 604Right-handed alpha
Helix 42
42
D
607 611Right-handed 310
Helix 43
43
D
621 636Right-handed alpha
Helix 44
44
D
651 665Right-handed alpha
Helix 45
45
D
667 671Right-handed 310
Helix 46
46
D
679 686Right-handed alpha
Helix 47
47
D
702 710Right-handed alpha
Helix 48
48
D
711 719Right-handed alpha
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There are 8 sheets in PDB entry 2IXF. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 505first strand
Strand 2
A
480 487anti-parallel
Strand 3
A
536 541anti-parallel
Strand 4
A
544 545anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 561first strand
Strand 2
A
640 644parallel
Strand 3
A
672 676parallel
Strand 4
A
510 514parallel
Strand 5
A
688 693parallel
Strand 6
A
696 701anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
498 505first strand
Strand 2
B
480 487anti-parallel
Strand 3
B
536 541anti-parallel
Strand 4
B
544 545anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 561first strand
Strand 2
B
640 644parallel
Strand 3
B
672 676parallel
Strand 4
B
510 514parallel
Strand 5
B
688 693parallel
Strand 6
B
696 701anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
498 505first strand
Strand 2
C
480 487anti-parallel
Strand 3
C
536 541anti-parallel
Strand 4
C
544 545anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
558 561first strand
Strand 2
C
640 644parallel
Strand 3
C
672 676parallel
Strand 4
C
510 514parallel
Strand 5
C
688 693parallel
Strand 6
C
696 701anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
498 505first strand
Strand 2
D
480 487anti-parallel
Strand 3
D
536 541anti-parallel
Strand 4
D
544 545anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
558 561first strand
Strand 2
D
640 644parallel
Strand 3
D
672 676parallel
Strand 4
D
510 514parallel
Strand 5
D
688 693parallel
Strand 6
D
696 701anti-parallel
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