Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0B entry

There is 1 chain in PDB entry 2J0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 50LEU 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2J0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 54Right-handed 310
Helix 2
2
A
63 67Right-handed 310
Helix 3
3
A
70 77Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
6
A
94 102Right-handed alpha
Helix 6
7
A
120 134Right-handed alpha
Helix 7
8
A
148 157Right-handed alpha
Helix 8
10
A
205 216Right-handed alpha
Helix 9
11
A
230 242Right-handed alpha
Helix 10
12
A
259 263Right-handed 310
Helix 11
13
A
267 271Right-handed 310
Helix 12
14
A
300 309Right-handed alpha
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There are 4 sheets in PDB entry 2J0B. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
86 90parallel
Strand 3
A
56 61parallel
Strand 4
A
137 142parallel
Strand 5
A
201 204anti-parallel
Strand 6
A
166 168anti-parallel
Strand 7
A
247 249parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
273 275anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
194 195anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
282 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il