Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0D entry

There are 2 chains in PDB entry 2J0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ARG 496
B
 GLY 26ARG 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2J0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 37Right-handed alpha
Helix 2
2
A
49 54Right-handed 310
Helix 3
3
A
55 69Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
111 117Right-handed 310
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
133 137Right-handed 310
Helix 8
8
A
145 166Right-handed alpha
Helix 9
9
A
172 190Right-handed alpha
Helix 10
10
A
203 212Right-handed alpha
Helix 11
11
A
219 226Right-handed alpha
Helix 12
12
A
228 236Right-handed alpha
Helix 13
13
A
242 259Right-handed alpha
Helix 14
14
A
271 280Right-handed alpha
Helix 15
15
A
291 339Right-handed alpha
Helix 16
16
A
346 351Right-handed alpha
Helix 17
17
A
353 367Right-handed alpha
Helix 18
18
A
397 402Right-handed alpha
Helix 19
19
A
415 420Right-handed 310
Helix 20
20
A
423 427Right-handed 310
Helix 21
21
A
437 441Right-handed 310
Helix 22
22
A
444 462Right-handed alpha
Helix 23
23
B
31 37Right-handed alpha
Helix 24
24
B
49 54Right-handed 310
Helix 25
25
B
55 69Right-handed alpha
Helix 26
26
B
86 95Right-handed alpha
Helix 27
27
B
111 117Right-handed 310
Helix 28
28
B
122 132Right-handed alpha
Helix 29
29
B
134 138Right-handed 310
Helix 30
30
B
142 144Right-handed 310
Helix 31
31
B
145 166Right-handed alpha
Helix 32
32
B
172 190Right-handed alpha
Helix 33
33
B
203 209Right-handed alpha
Helix 34
34
B
218 226Right-handed alpha
Helix 35
35
B
228 236Right-handed alpha
Helix 36
36
B
242 258Right-handed alpha
Helix 37
37
B
271 276Right-handed alpha
Helix 38
38
B
291 323Right-handed alpha
Helix 39
39
B
324 339Right-handed alpha
Helix 40
40
B
340 343Right-handed 310
Helix 41
41
B
346 351Right-handed alpha
Helix 42
42
B
353 367Right-handed alpha
Helix 43
43
B
397 402Right-handed alpha
Helix 44
44
B
415 420Right-handed 310
Helix 45
45
B
423 427Right-handed 310
Helix 46
46
B
437 441Right-handed 310
Helix 47
47
B
444 462Right-handed alpha
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There are 6 sheets in PDB entry 2J0D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
393 396parallel
Strand 4
A
373 376anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
463 467anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
387 388anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
393 396parallel
Strand 4
B
373 376anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
490 495anti-parallel
Strand 3
B
463 466anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
386 388anti-parallel
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