Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0J entry

There is 1 chain in PDB entry 2J0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 35GLN 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2J0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 51Right-handed 310
Helix 2
2
A
63 75Right-handed alpha
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
A
103 112Right-handed alpha
Helix 5
5
A
132 139Right-handed alpha
Helix 6
6
A
140 159Right-handed alpha
Helix 7
7
A
160 163Right-handed 310
Helix 8
8
A
164 180Right-handed alpha
Helix 9
9
A
186 189Right-handed 310
Helix 10
10
A
190 200Right-handed alpha
Helix 11
11
A
202 206Right-handed 310
Helix 12
12
A
208 215Right-handed alpha
Helix 13
13
A
216 229Right-handed alpha
Helix 14
14
A
230 232Right-handed 310
Helix 15
15
A
235 248Right-handed alpha
Helix 16
16
A
249 251Right-handed 310
Helix 17
17
A
295 297Right-handed 310
Helix 18
18
A
333 352Right-handed alpha
Helix 19
19
A
411 415Right-handed 310
Helix 20
20
A
418 420Right-handed 310
Helix 21
21
A
461 478Right-handed alpha
Helix 22
22
A
506 514Right-handed alpha
Helix 23
23
A
519 540Right-handed alpha
Helix 24
24
A
548 550Right-handed 310
Helix 25
25
A
585 589Right-handed 310
Helix 26
26
A
590 597Right-handed alpha
Helix 27
27
A
600 617Right-handed alpha
Helix 28
28
A
627 638Right-handed alpha
Helix 29
29
A
648 659Right-handed alpha
Helix 30
30
A
662 666Right-handed 310
Helix 31
31
A
668 686Right-handed alpha
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There are 5 sheets in PDB entry 2J0J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
83 89anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
53 58anti-parallel
Strand 6
A
398 401anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
279 282anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
299 301anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
279 282anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
304 306anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 429first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
449 455anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
559 562anti-parallel
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