Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0K entry

There are 2 chains in PDB entry 2J0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 35GLN 686
B
 ARG 35GLN 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2J0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 51Right-handed 310
Helix 2
2
A
63 74Right-handed alpha
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
A
104 112Right-handed alpha
Helix 5
5
A
116 118Right-handed 310
Helix 6
6
A
132 139Right-handed alpha
Helix 7
7
A
140 159Right-handed alpha
Helix 8
8
A
164 180Right-handed alpha
Helix 9
9
A
184 189Right-handed 310
Helix 10
10
A
190 200Right-handed alpha
Helix 11
11
A
202 206Right-handed 310
Helix 12
12
A
208 215Right-handed alpha
Helix 13
13
A
216 230Right-handed alpha
Helix 14
14
A
235 248Right-handed alpha
Helix 15
15
A
249 251Right-handed 310
Helix 16
16
A
295 297Right-handed 310
Helix 17
17
A
333 352Right-handed alpha
Helix 18
18
A
418 420Right-handed 310
Helix 19
19
A
461 478Right-handed alpha
Helix 20
20
A
506 514Right-handed alpha
Helix 21
21
A
519 539Right-handed alpha
Helix 22
22
A
548 550Right-handed 310
Helix 23
23
A
585 589Right-handed 310
Helix 24
24
A
590 597Right-handed alpha
Helix 25
25
A
600 617Right-handed alpha
Helix 26
26
A
627 638Right-handed alpha
Helix 27
27
A
648 659Right-handed alpha
Helix 28
28
A
662 666Right-handed 310
Helix 29
29
A
668 685Right-handed alpha
Helix 30
30
B
48 51Right-handed 310
Helix 31
31
B
63 75Right-handed alpha
Helix 32
32
B
79 81Right-handed 310
Helix 33
33
B
103 113Right-handed alpha
Helix 34
34
B
116 118Right-handed 310
Helix 35
35
B
132 138Right-handed alpha
Helix 36
36
B
140 159Right-handed alpha
Helix 37
37
B
164 180Right-handed alpha
Helix 38
38
B
186 189Right-handed 310
Helix 39
39
B
190 200Right-handed alpha
Helix 40
40
B
202 206Right-handed 310
Helix 41
41
B
208 213Right-handed alpha
Helix 42
42
B
216 231Right-handed alpha
Helix 43
43
B
235 248Right-handed alpha
Helix 44
44
B
295 297Right-handed 310
Helix 45
45
B
333 352Right-handed alpha
Helix 46
46
B
418 420Right-handed 310
Helix 47
47
B
461 476Right-handed alpha
Helix 48
48
B
506 514Right-handed alpha
Helix 49
49
B
519 539Right-handed alpha
Helix 50
50
B
548 550Right-handed 310
Helix 51
51
B
585 589Right-handed 310
Helix 52
52
B
590 597Right-handed alpha
Helix 53
53
B
600 617Right-handed alpha
Helix 54
54
B
627 637Right-handed alpha
Helix 55
55
B
648 658Right-handed alpha
Helix 56
56
B
662 666Right-handed 310
Helix 57
57
B
668 685Right-handed alpha
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There are 8 sheets in PDB entry 2J0K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
83 89anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
53 57anti-parallel
Strand 6
A
399 401anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
268 275anti-parallel
Strand 4
A
256 262anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
299 306anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 429first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
450 454anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
559 562anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
83 89anti-parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
36 40parallel
Strand 5
B
53 58anti-parallel
Strand 6
B
398 400anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
279 283anti-parallel
Strand 3
B
268 275anti-parallel
Strand 4
B
256 262anti-parallel
Strand 5
B
327 331anti-parallel
Strand 6
B
314 320anti-parallel
Strand 7
B
299 306anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 429first strand
Strand 2
B
436 441anti-parallel
Strand 3
B
450 455anti-parallel
Strand 4
B
496 500anti-parallel
Strand 5
B
486 490anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 556first strand
Strand 2
B
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il