Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0M entry

There are 2 chains in PDB entry 2J0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31ILE 359
B
 ASP 414GLN 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2J0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 75Right-handed alpha
Helix 2
2
A
79 81Right-handed 310
Helix 3
3
A
103 109Right-handed alpha
Helix 4
4
A
133 138Right-handed alpha
Helix 5
5
A
140 159Right-handed alpha
Helix 6
6
A
164 180Right-handed alpha
Helix 7
7
A
190 200Right-handed alpha
Helix 8
8
A
202 206Right-handed 310
Helix 9
9
A
208 215Right-handed alpha
Helix 10
10
A
216 229Right-handed alpha
Helix 11
11
A
230 232Right-handed 310
Helix 12
12
A
235 248Right-handed alpha
Helix 13
13
A
333 352Right-handed alpha
Helix 14
14
B
418 420Right-handed 310
Helix 15
15
B
461 477Right-handed alpha
Helix 16
16
B
506 514Right-handed alpha
Helix 17
17
B
519 539Right-handed alpha
Helix 18
18
B
548 550Right-handed 310
Helix 19
19
B
585 589Right-handed 310
Helix 20
20
B
590 596Right-handed alpha
Helix 21
21
B
600 617Right-handed alpha
Helix 22
22
B
627 637Right-handed alpha
Helix 23
23
B
648 659Right-handed alpha
Helix 24
24
B
662 666Right-handed 310
Helix 25
25
B
668 685Right-handed alpha
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There are 4 sheets in PDB entry 2J0M. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
120 126parallel
Strand 4
A
83 89anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
268 275anti-parallel
Strand 4
A
256 262anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
299 305anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 430first strand
Strand 2
B
435 442anti-parallel
Strand 3
B
448 455anti-parallel
Strand 4
B
496 500anti-parallel
Strand 5
B
486 490anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 556first strand
Strand 2
B
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il