Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0N entry

There are 2 chains in PDB entry 2J0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 144VAL 314
B
 GLU 133ILE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2J0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 175Right-handed alpha
Helix 2
2
A
192 207Right-handed alpha
Helix 3
3
A
219 230Right-handed alpha
Helix 4
4
A
250 263Right-handed alpha
Helix 5
5
A
273 312Right-handed alpha
Helix 6
6
B
135 149Right-handed alpha
Helix 7
7
B
149 175Right-handed alpha
Helix 8
8
B
191 206Right-handed alpha
Helix 9
9
B
219 231Right-handed alpha
Helix 10
10
B
250 262Right-handed alpha
Helix 11
11
B
273 315Right-handed alpha
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There are 4 sheets in PDB entry 2J0N. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
268 272anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
243 248anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
269 272anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 240first strand
Strand 2
B
243 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il