Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0O entry

There are 2 chains in PDB entry 2J0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 39CYS 322
B
 HIS 39CYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2J0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 66Right-handed alpha
Helix 2
2
A
71 102Right-handed alpha
Helix 3
3
A
107 113Right-handed alpha
Helix 4
4
A
114 117Right-handed 310
Helix 5
5
A
130 149Right-handed alpha
Helix 6
6
A
149 175Right-handed alpha
Helix 7
7
A
191 207Right-handed alpha
Helix 8
8
A
219 230Right-handed alpha
Helix 9
9
A
250 262Right-handed alpha
Helix 10
10
A
272 321Right-handed alpha
Helix 11
11
B
39 66Right-handed alpha
Helix 12
12
B
74 102Right-handed alpha
Helix 13
13
B
107 113Right-handed alpha
Helix 14
14
B
114 117Right-handed 310
Helix 15
15
B
130 149Right-handed alpha
Helix 16
16
B
149 176Right-handed alpha
Helix 17
17
B
191 207Right-handed alpha
Helix 18
18
B
219 230Right-handed alpha
Helix 19
19
B
250 264Right-handed alpha
Helix 20
20
B
272 321Right-handed alpha
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There are 4 sheets in PDB entry 2J0O. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
188 190anti-parallel
Strand 3
A
269 271anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
235 239anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
188 190anti-parallel
Strand 3
B
269 271anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
235 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il