Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0P entry

There is 1 chain in PDB entry 2J0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LYS 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2J0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
20 28Right-handed alpha
Helix 3
3
A
31 40Right-handed alpha
Helix 4
4
A
50 58Right-handed alpha
Helix 5
5
A
59 62Right-handed 310
Helix 6
6
A
146 158Right-handed alpha
Helix 7
7
A
181 192Right-handed alpha
Helix 8
8
A
194 196Right-handed 310
Helix 9
9
A
197 205Right-handed alpha
Helix 10
10
A
208 216Right-handed alpha
Helix 11
11
A
227 240Right-handed alpha
Helix 12
12
A
284 286Right-handed 310
Helix 13
13
A
328 336Right-handed alpha
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There are 2 sheets in PDB entry 2J0P. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
108 118anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
135 140anti-parallel
Strand 5
A
64 69anti-parallel
Strand 6
A
73 79anti-parallel
Strand 7
A
277 282anti-parallel
Strand 8
A
269 273anti-parallel
Strand 9
A
263 266anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
101 104anti-parallel
Strand 4
A
252 258anti-parallel
Strand 5
A
243 248anti-parallel
Strand 6
A
313 319anti-parallel
Strand 7
A
301 307anti-parallel
Strand 8
A
288 294anti-parallel
Strand 9
A
221 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il