Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0V entry

There are 4 chains in PDB entry 2J0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1PRO 178
B
 GLY -2ARG 181
C
 LYS 5GLN 177
D
 SER -1PRO 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2J0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
72 76Right-handed 310
Helix 3
3
A
89 99Right-handed alpha
Helix 4
4
A
99 108Right-handed alpha
Helix 5
5
A
119 124Right-handed alpha
Helix 6
6
A
125 132Right-handed alpha
Helix 7
7
A
137 149Right-handed alpha
Helix 8
8
A
163 177Right-handed alpha
Helix 9
9
B
18 29Right-handed alpha
Helix 10
10
B
72 76Right-handed 310
Helix 11
11
B
89 99Right-handed alpha
Helix 12
12
B
99 108Right-handed alpha
Helix 13
13
B
119 124Right-handed alpha
Helix 14
14
B
125 131Right-handed alpha
Helix 15
15
B
137 149Right-handed alpha
Helix 16
16
B
163 177Right-handed alpha
Helix 17
17
C
18 29Right-handed alpha
Helix 18
18
C
89 99Right-handed alpha
Helix 19
19
C
99 108Right-handed alpha
Helix 20
20
C
119 124Right-handed alpha
Helix 21
21
C
125 132Right-handed alpha
Helix 22
22
C
137 149Right-handed alpha
Helix 23
23
C
163 177Right-handed alpha
Helix 24
24
D
18 29Right-handed alpha
Helix 25
25
D
72 76Right-handed 310
Helix 26
26
D
89 99Right-handed alpha
Helix 27
27
D
99 108Right-handed alpha
Helix 28
28
D
119 124Right-handed alpha
Helix 29
29
D
125 132Right-handed alpha
Helix 30
30
D
137 149Right-handed alpha
Helix 31
31
D
163 177Right-handed alpha
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There are 4 sheets in PDB entry 2J0V. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
6 13parallel
Strand 4
A
80 86parallel
Strand 5
A
113 118parallel
Strand 6
A
152 155parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 49first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
3 13parallel
Strand 4
B
80 86parallel
Strand 5
B
113 118parallel
Strand 6
B
152 155parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
55 59anti-parallel
Strand 3
C
6 13parallel
Strand 4
C
80 86parallel
Strand 5
C
113 118parallel
Strand 6
C
152 155parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 48first strand
Strand 2
D
53 59anti-parallel
Strand 3
D
6 13parallel
Strand 4
D
80 86parallel
Strand 5
D
113 118parallel
Strand 6
D
152 155parallel
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