Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0W entry

There is 1 chain in PDB entry 2J0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLU 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2J0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
56 76Right-handed alpha
Helix 5
5
A
81 103Right-handed alpha
Helix 6
6
A
107 132Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
158 170Right-handed alpha
Helix 9
9
A
170 177Right-handed alpha
Helix 10
10
A
199 212Right-handed alpha
Helix 11
11
A
245 254Right-handed alpha
Helix 12
12
A
263 271Right-handed alpha
Helix 13
13
A
320 329Right-handed alpha
Helix 14
14
A
367 378Right-handed alpha
Helix 15
15
A
401 408Right-handed alpha
Helix 16
16
A
435 449Right-handed alpha
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There are 4 sheets in PDB entry 2J0W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
178 182parallel
Strand 3
A
33 38parallel
Strand 4
A
5 9parallel
Strand 5
A
216 221parallel
Strand 6
A
274 278parallel
Strand 7
A
287 290anti-parallel
Strand 8
A
242 244parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
193 195anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
239 240anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
299 313anti-parallel
Strand 4
A
380 393anti-parallel
Strand 5
A
426 432anti-parallel
Strand 6
A
417 419anti-parallel
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