Analysis of interatomic Contacts of Structural Units in PDB entry:
2J1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J1D entry

There is 1 chain in PDB entry 2J1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 LYS 601GLU 1025
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 2J1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
619 623Right-handed 310
Helix 2
2
G
626 631Right-handed 310
Helix 3
3
G
632 634Right-handed 310
Helix 4
4
G
635 640Right-handed alpha
Helix 5
5
G
641 649Right-handed alpha
Helix 6
6
G
689 704Right-handed alpha
Helix 7
7
G
706 716Right-handed alpha
Helix 8
8
G
724 734Right-handed alpha
Helix 9
9
G
737 746Right-handed alpha
Helix 10
10
G
750 753Right-handed 310
Helix 11
11
G
755 766Right-handed alpha
Helix 12
12
G
769 825Right-handed alpha
Helix 13
13
G
836 846Right-handed 310
Helix 14
14
G
855 868Right-handed alpha
Helix 15
15
G
869 872Right-handed 310
Helix 16
16
G
873 878Right-handed alpha
Helix 17
17
G
880 886Right-handed alpha
Helix 18
18
G
888 915Right-handed alpha
Helix 19
19
G
923 960Right-handed alpha
Helix 20
20
G
968 995Right-handed alpha
Helix 21
21
G
995 1000Right-handed alpha
Helix 22
22
G
1000 1023Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2J1D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il